BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919090

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G04190.1 | Symbols: TPR3 | Tetratricopeptide repeat (TPR)-li...   268    1e-71


> AT1G04190.1 | Symbols: TPR3 | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr1:1106428-1108715 REVERSE LENGTH=1334
Length=1334

 Score =  268 bits (145),  Expect = 1e-71
 Identities = 170/182 (93%), Gaps = 2/182 (1%)
 Strand=Plus/Plus

Query  1    TTTCTTACAAAACTCGAGAAATGATGGCGGAGAAAGCAGGCAAGGCAACAAATGGTGGAG  60
            ||||||||||| ||| |||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct  136  TTTCTTACAAACCTCTAGAAATAATGGCCGAGAAAGCAGGCAAGGCAACGAATGGTGGAG  195

Query  61   AAGCAGAGAAGTCTCTCAAA-GACAAAGGCAACGAGTTCTTCAAAGCTGGCAACTTCCTT  119
            |||||||||| ||||| ||| || ||||| || ||||||||||||||||||||||| |||
Sbjct  196  AAGCAGAGAAATCTCT-AAAGGAAAAAGGAAATGAGTTCTTCAAAGCTGGCAACTTTCTT  254

Query  120  AAAGCCGCAGCTCTCTATACTCAAGCCATCAAGCTCGATCCTTCTAACGCTACTCTTTAC  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  255  AAAGCCGCAGCTCTCTATACTCAAGCCATCAAGCTCGATCCTTCTAACGCTACTCTTTAC  314

Query  180  AG  181
            ||
Sbjct  315  AG  316



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12265330756


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5