BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919100
Length=614
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04240.1 | Symbols: SHY2, IAA3 | AUX/IAA transcriptional reg... 987 0.0
AT5G43700.1 | Symbols: ATAUX2-11, IAA4 | AUX/IAA transcriptiona... 411 5e-114
> AT1G04240.1 | Symbols: SHY2, IAA3 | AUX/IAA transcriptional regulator
family protein | chr1:1128188-1129551 REVERSE LENGTH=1178
Length=1178
Score = 987 bits (534), Expect = 0.0
Identities = 588/614 (96%), Gaps = 3/614 (0%)
Strand=Plus/Plus
Query 1 CTCCTGCAATTCTTGAAGAAATGGATGAGTTTGTTAACCTCAAGGAAACGGAGCTGAGGC 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 213 CTCCTGCAATTCTTGAAGAAATGGATGAGTTTGTTAACCTCAAGGAAACAGAGCTGAGGC 272
Query 61 TGGGATTACCAGGAACAGACAATGTATGCGAAGCAAAAGAGAGCATTATTTCTTGCTGTA 120
|||||||||| |||||||| |||||||| |||||||||||||| | ||||||||||||
Sbjct 273 TGGGATTACCGGGAACAGATAATGTATGTGAAGCAAAAGAGAG-A--GTTTCTTGCTGTA 329
Query 121 ATAGCAACAATAAGAGAGCATTATCAAGTGATAATGAGAAGGAGAATGAATCATCATCAA 180
||| |||||||||||||| | |||||| ||||| ||||||||||| ||||||||||||||
Sbjct 330 ATAACAACAATAAGAGAGTACTATCAACTGATACTGAGAAGGAGATTGAATCATCATCAA 389
Query 181 GGAAAACTGAAACATCCCCTCCTCGAAAGGCTCAGATTGTTGGATGGCCACCAGTTAGAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 GGAAAACTGAAACATCCCCTCCTCGAAAGGCTCAGATTGTTGGATGGCCACCAGTTAGAT 449
Query 241 CTTACAGGAAGAACAACATTCAGACAAAGAAGAATGAATCTGAGCATGAGGGTCACGGAA 300
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 450 CTTACAGGAAGAACAACATTCAGAGTAAGAAGAATGAATCTGAGCATGAGGGTCAAGGAA 509
Query 301 TCTATGTGAAAGTAAGTATGGATGGTGCACCATACTTGAGGAAAATAGATCTGAGTTGTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 TCTATGTGAAAGTAAGTATGGATGGTGCACCATACTTGAGGAAAATAGATCTGAGTTGTT 569
Query 361 ACAAAGGATACTCAGAGTTGCTTAAAGCTTTAGAAGTGATGTTCAAATTCTCTGTGGGAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 ACAAAGGATACTCAGAGTTGCTTAAAGCTTTAGAAGTGATGTTCAAATTCTCTGTGGGAG 629
Query 421 AGTATTTTGAGAGAGATGGATATAAAGGTTCAGACTTTGTGCCTACTTATGAAGACAAAG 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 AGTACTTTGAGAGAGATGGATATAAAGGTTCAGACTTTGTGCCTACTTATGAAGACAAAG 689
Query 481 ATGGTGATTGGATGCTCATTGGAGACGTTCCATGGGAGATGTTTATATGTACTTGCAAGA 540
|||||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||
Sbjct 690 ATGGTGATTGGATGCTCATTGGTGATGTTCCATGGGAGATGTTCATATGTACGTGCAAGA 749
Query 541 GACTAAGGATCATGAAAGGATCAGAAGCCAAAGGTTTAAGCTGTGGTGTATGAGATATAG 600
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 750 GACTAAGGATCATGAAAGGATCAGAAGCCAAAGGTTTAGGCTGTGGTGTATGAGATATAT 809
Query 601 CTTCACGAAACCTA 614
||||| |||| |||
Sbjct 810 CTTCAAGAAATCTA 823
> AT5G43700.1 | Symbols: ATAUX2-11, IAA4 | AUX/IAA transcriptional
regulator family protein | chr5:17550233-17551581 FORWARD
LENGTH=1168
Length=1168
Score = 411 bits (222), Expect = 5e-114
Identities = 371/440 (84%), Gaps = 21/440 (5%)
Strand=Plus/Plus
Query 155 TGAGAAGGAGAATGAATCATCATCAAGG-AAAACTGAAACATCCCCTCCTCGAAAGGCTC 213
|||||| |||| |||||| || | || ||||||||||| | |||||| ||||||||
Sbjct 361 TGAGAAAGAGATTGAATC--CA-C-TGGAAAAACTGAAACCGCTTCTCCTCCAAAGGCTC 416
Query 214 AGATTGTTGGATGGCCACCAGTTAGATCTTACAGGAAGAACAACATTCAGACAAAGAAGA 273
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 417 AGATTGTTGGATGGCCACCAGTTAGATCTTACAGAAAGAACAATGTTCAGACAAAGAAGA 476
Query 274 ATGAATCTGAGCATGAGGGTCACGGAATCTATGTGAAAGTAAGTATGGATGGTGCACCAT 333
||||||||| | | | ||| |||| ||||||||||||||||||||||||||| ||||
Sbjct 477 GTGAATCTGA--A-G-G--TCAAGGAAACTATGTGAAAGTAAGTATGGATGGTGCTCCAT 530
Query 334 A-CTTGAGGAAAATAGATCTGA-GTTGTTACAAAGGATACTC-AGAGTTGCTTAAAGCT- 389
| || ||||| |||||||| | | ||| | ||| ||| || ||||||| | ||| |
Sbjct 531 ATCTA-AGGAAGATAGATCTAACGATGT-ATAAACAATA-TCCAGAGTTGATGAAATCAC 587
Query 390 TTAGAAGTGATGTTCAAATTCTCTGTGGGAGAGTATTTTGAGAGAGATGGATATAAAGGT 449
|| ||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 588 TT-GAAAACATGTTTAAATTCTCTGTGGGAGAATATTTTGAGAGAGAAGGATATAAAGGC 646
Query 450 TCAGACTTTGTGCCTACTTATGAAGACAAAGATGGTGATTGGATGCTCATTGGAGACGTT 509
||||||||||| ||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 647 TCAGACTTTGTACCTACTTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGTGATGTT 706
Query 510 CCATGGGAGATGTTTATAT-GTACTTGCAAGAGACTAAGGATCATGAAAGGATCAGAAGC 568
|| |||||||||||| | | || |||| ||||| |||||||||||||||||||| ||||
Sbjct 707 CCTTGGGAGATGTTTGTTTCGT-CTTGTAAGAGGCTAAGGATCATGAAAGGATCTGAAGT 765
Query 569 CAAAGGTTTAAGCTGTGGTG 588
||||||||| | |||||||
Sbjct 766 TAAAGGTTTAGGTTGTGGTG 785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29587912583
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5