BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919105
Length=513
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04290.1 | Symbols: | Thioesterase superfamily protein | ch... 758 0.0
AT1G04295.1 | Symbols: | other RNA | chr1:1147781-1148435 FORW... 398 3e-110
> AT1G04290.1 | Symbols: | Thioesterase superfamily protein |
chr1:1147523-1148533 REVERSE LENGTH=847
Length=847
Score = 758 bits (410), Expect = 0.0
Identities = 469/497 (94%), Gaps = 5/497 (1%)
Strand=Plus/Plus
Query 3 aaaaagaaaa-ag-aa-aagaaaagaaTGGATCTAGAGTCGGTGAGAAGGTATCTGGAAG 59
|||||||||| | || ||||| |||||||||||||| ||||||| || |||||||||||
Sbjct 156 AAAAAGAAAAGGGAAAGAAGAAGAGAATGGATCTAGAATCGGTGAAAAAGTATCTGGAAG 215
Query 60 GAGATGAAGACGAAAAGGCAAAGGAATCCAA-GGTTGCGAAATTACCACACAGATTCCTC 118
||||||||||||||||||| |||||| |||| ||| ||||||||||||||||||||||||
Sbjct 216 GAGATGAAGACGAAAAGGCCAAGGAA-CCAATGGTGGCGAAATTACCACACAGATTCCTC 274
Query 119 GAACGATTCGTAACCAATGGTCTTAAAGTGGATCTCATCGAACCTGGTCGTATCGTCTGC 178
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 275 GAACGATTCGTAACCAATGGTCTTAAAGTGGATCTCATCGAACCTGGCCGTATCGTCTGC 334
Query 179 TCCATGAAAATCCCTCCTCATCTCCTGAACGCAGGGAATTTCTTACACGGAGGAGCAACG 238
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 335 TCCATGAAAATCCCTCCTCATCTCCTGAACGCAGGGAAATTCTTACACGGAGGAGCAACG 394
Query 239 GCGACTCTGGTGGATCTGATAGGATCAGCAGTGATTTACACAGCCGGAGTTTCACATTCC 298
||||| ||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 395 GCGACGCTGGTGGATTTGATAGGATCAGCAGTGATCTACACAGCCGGAGCTTCACATTCC 454
Query 299 GGAGTTTCTGTCGAGATCAATGTTTCATACCTTGATGCTGCTTTTCTCGATGAAGAGATC 358
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 GGAGTTTCAGTGGAGATCAATGTTTCATACCTTGATGCTGCTTTTCTCGATGAAGAGATA 514
Query 359 GAGATAGAATCAAAGGCATTGCGTGTTGGAAAAGCTGTAGCAGTAGTGAGTGTTGAGCTC 418
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 515 GAGATAGAATCAAAGGCATTGCGTGTTGGTAAAGCTGTAGCAGTAGTGAGTGTGGAGCTG 574
Query 419 AGGAAGAAGAAGACTGCTAAGATCATTGCTCAAGGTCGTCATACTAAGTACTTTGCTCCT 478
|||||||||| ||||| |||||| |||||||||||||||||||| |||||||||||||||
Sbjct 575 AGGAAGAAGACGACTGGTAAGATTATTGCTCAAGGTCGTCATACCAAGTACTTTGCTCCT 634
Query 479 CGTTCCAACCTTTGATC 495
|||||||||||||||||
Sbjct 635 CGTTCCAACCTTTGATC 651
> AT1G04295.1 | Symbols: | other RNA | chr1:1147781-1148435 FORWARD
LENGTH=552
Length=552
Score = 398 bits (215), Expect = 3e-110
Identities = 311/352 (88%), Gaps = 27/352 (8%)
Strand=Plus/Minus
Query 3 aaaaagaaaa-ag-aa-aagaaaagaaTGGATCTAGAGTCGGTGAGAAGGTATCTGGAAG 59
|||||||||| | || ||||| |||||||||||||| ||||||| || |||||||||||
Sbjct 495 AAAAAGAAAAGGGAAAGAAGAAGAGAATGGATCTAGAATCGGTGAAAAAGTATCTGGAAG 436
Query 60 GAGATGAAGACGAAAAGGCAAAGGAATCCAA-GGTTGCGAAATTACCACACAGATTCCTC 118
||||||||||||||||||| |||||| |||| ||| ||||||||||||||||||||||||
Sbjct 435 GAGATGAAGACGAAAAGGCCAAGGAA-CCAATGGTGGCGAAATTACCACACAGATTCCTC 377
Query 119 GAACGATTCGTAACCAATGGTCTTAAAGTGGATCTCATCGAACCTGGTCGTATCGTCTGC 178
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 376 GAACGATTCGTAACCAATGGTCTTAAAGTGGATCTCATCGAACCTGGCCGTATCGTCTGC 317
Query 179 TCCATGAAAATCCCTCCTCATCTCCTGAACGCAGGGAATTTCTTACACGGAGGAGCAACG 238
|||||||||||||||||||||||| | || | | |||| |||||
Sbjct 316 TCCATGAAAATCCCTCCTCATCTC---A-CG--G--A-----------GGAG---CAACG 279
Query 239 GCGACTCTGGTGGATCTGATAGGATCAGCAGTGATTTACACAGCCGGAGTTTCACATTCC 298
||||| ||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 278 GCGACGCTGGTGGATTTGATAGGATCAGCAGTGATCTACACAGCCGGAGCTTCACATTCC 219
Query 299 GGAGTTTCTGTCGAGATCAATGTTTCATACCTTGATGCTGCTTTTCTCGATG 350
|||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 218 GGAGTTTCAGTGGAGATCAATGTTTCATACCTTGATGCTGCTTTTCTCGATG 167
Score = 128 bits (69), Expect = 5e-29
Identities = 79/84 (94%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 350 GAAGAGATCGAGATAGAATCAAAGGCATTGCGTGTTGGAAAAGCTGTAGCAGTAGTGAGT 409
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 84 GAAGAGATAGAGATAGAATCAAAGGCATTGCGTGTTGGTAAAGCTGTAGCAGTAGTGAGT 25
Query 410 GTTGAGCTCAGGAAGAAGAAGACT 433
|| ||||| |||||||||| ||||
Sbjct 24 GTGGAGCTGAGGAAGAAGACGACT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24514263736
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5