BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919108
Length=345
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04330.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 505 1e-142
> AT1G04330.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast
hits to 74 proteins in 6 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:1161311-1161982 REVERSE
LENGTH=672
Length=672
Score = 505 bits (273), Expect = 1e-142
Identities = 321/344 (93%), Gaps = 4/344 (1%)
Strand=Plus/Plus
Query 2 ATACAACAATAAACTCCGGCTATGTCGTCCACGGCGAGAAATGTTTCCGGCAGCGGGAAC 61
||||||| | | | ||| |||||||||||||||||||||||| |||| ||||||||||||
Sbjct 79 ATACAAC-A-AGA-TCCTGCTATGTCGTCCACGGCGAGAAATATTTCTGGCAGCGGGAAC 135
Query 62 CGAAAGTCGAGTAGGCTGCAGCGGCGGGCTCCACCGCCTCTTAAGATAAACCCTTCCGAA 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 136 CGAAAGTCGAGTAGGCTGCAGCGGCGGGCTCCACCGCCTCTTAAGATAAACCCTTGCGAA 195
Query 122 GCGAATTGGAAAGTGGCTATTCCTTTTCTATCACCTACGGAGTCGCCGCCACAGAAGCCA 181
|||||||||||||||||||||||| |||||||||||||||||||||| ||||| || |||
Sbjct 196 GCGAATTGGAAAGTGGCTATTCCTCTTCTATCACCTACGGAGTCGCCACCACAAAAACCA 255
Query 182 CCGGCGGTAATGAAGAGGGAGGAGCAGCGGTGGGGAAAAGAGGCGGAGAAGCCGCCGGTT 241
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 256 CCGGCGGTAATGAAGAGGGAGGAGCAACGGTGGGGTAAAGAGGCGGAGAAGCCGCCGGTT 315
Query 242 TTCAAGAAGTGGCAGCACCCTGCGGCTCCGTTTTACTATCAGCCAGCGCCGTCATCGAAT 301
|| |||||||||||||| || || |||||||||||||| |||||||| ||||||||||||
Sbjct 316 TTTAAGAAGTGGCAGCATCCGGCAGCTCCGTTTTACTACCAGCCAGCACCGTCATCGAAT 375
Query 302 CAGCCGTTTGGATGGCCAAATTAACGGTCTCTTTAATACTAGGT 345
|||||||||| |||||||||||||||||||||| |||| |||||
Sbjct 376 CAGCCGTTTGCATGGCCAAATTAACGGTCTCTT-AATATTAGGT 418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16135947429
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5