BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919109
Length=521
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04340.1 | Symbols: | HR-like lesion-inducing protein-relat... 815 0.0
AT5G43460.1 | Symbols: | HR-like lesion-inducing protein-relat... 429 1e-119
> AT1G04340.1 | Symbols: | HR-like lesion-inducing protein-related
| chr1:1163097-1164851 REVERSE LENGTH=842
Length=842
Score = 815 bits (441), Expect = 0.0
Identities = 477/495 (96%), Gaps = 0/495 (0%)
Strand=Plus/Plus
Query 15 GAGAAAATGGGTTTCTTCTCTTTTCTTGGAAGAGTTCTCTTCGCTTCGTTATTCATCCTC 74
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 109 GAGAAAATGGGTTTCTTCTCTTTTCTTGGAAGAGTTCTCTTCGCTTCTTTATTCATCCTC 168
Query 75 TCCGCTTGGCAAATGTTCAATGACTTTGGAACTGACGGTGGTCCAGCAGCCAAAGAGTTA 134
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 169 TCCGCTTGGCAAATGTTCAATGACTTTGGAACTGACGGTGGTCCAGCAGCTAAAGAGTTA 228
Query 135 GCTCCAAAGCTTGATCTGAACAAAGCACATCTCTCTTCCATATTTGGAGTAGCATTGCCC 194
||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||
Sbjct 229 GCTCCAAAGCTTGATCTGACCAAAGCACATCTCTCTTCCATATTGGGAGTATCATTGCCC 288
Query 195 AACTTAGAGGTGAAACAAGTCGTGTGGACTATTGTTGCTCTGAAAGGACTCGGAGGCTTA 254
||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct 289 AACTTAGAGGTGAAACAAGTCGTGTGGGCTATTGTTGCTCTGAAAGGCCTAGGAGGCTTA 348
Query 255 CTCTTTGTTATCGGCAACATCTTCGGTGCCTATCTTCTGGCTGTCCACTTGGTGGTTGTC 314
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 349 CTCTTTGTTATCGGCAACATCTTTGGTGCCTATCTTCTGGCTGTCTACTTGGTGGTTGTC 408
Query 315 AGTCCCATTTTATATGATTTCTACAACTACGGACCCGAGGACCGCCAATTCTCTCTTCTA 374
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 409 AGTCCCATTTTATATGATTTCTACAACTATGGACCCGAGGACCGCCAATTCTCTCTTCTA 468
Query 375 TTGACTGAATTCTTACAGAGTGTTGCACTTCTCGGGGCTTTGCTATTTTTTATCGGAATG 434
|||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 469 TTGACTGAATTCTTGCAGAGTGTTGCGCTTCTCGGGGCATTGCTATTTTTCATCGGAATG 528
Query 435 AAGAATTCGACGACGACCTCCAAGAGGATTCTGAAGAAGAGGACTCCCAAGCCTAAAGCT 494
|||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AAGAATTCAACAACGAGCTCCAAGAGGATTCTGAAGAAGAGGACTCCCAAGCCTAAAGCT 588
Query 495 GCTTAGAGTTCTTCT 509
|||||||||||||||
Sbjct 589 GCTTAGAGTTCTTCT 603
> AT5G43460.1 | Symbols: | HR-like lesion-inducing protein-related
| chr5:17459873-17461751 FORWARD LENGTH=858
Length=858
Score = 429 bits (232), Expect = 1e-119
Identities = 406/486 (84%), Gaps = 27/486 (6%)
Strand=Plus/Plus
Query 21 ATGGGTTTCTTCTCTTTTCTTGGAAGAGTTCTCTTCGCTTCGT-TATTCATCCTCTCCGC 79
||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||
Sbjct 135 ATGGGTTTCTTCTCTTTTCTTGGAAGAGTTCTCTTCGCTTC-TCTCTTTATCCTCTCCGC 193
Query 80 TTGGCAAATGTTCAATGACTTTGGAACTGACGGTGGTCCAGCAGCCAAAGAGTTAGCTCC 139
|||||||||||||||||| | || || | | || ||||| ||||| || |||||
Sbjct 194 TTGGCAAATGTTCAATGA-T--GG---TG--G-T---CCTGCAGCTAAAGAATTGGCTCC 241
Query 140 AAAGCTTGATCTGAACAAAGCACATCTCTCTTCCATATTTGGAGTAGCATTGCCCAACTT 199
|||||||||| || || |||||| | ||||| | ||| |||||| |||||||||| |
Sbjct 242 AAAGCTTGATTTGGTTAAGGCACATTTATCTTCTAGATTAGGAGTAACATTGCCCAAAAT 301
Query 200 AGAGGTGAAACAAGTCGTGTGG-ACTATTGTTGCTCTGAAAGGACTCGGAGGCTTACTCT 258
|||||||| ||||||||| || |||||| |||| ||||||||| |||||||||||||||
Sbjct 302 AGAGGTGAGACAAGTCGT-TGCTACTATTATTGCCCTGAAAGGAGTCGGAGGCTTACTCT 360
Query 259 TTGTTATCGGCAACATCTTCGGTGCCTATCTTCTGGCTGTCC-ACTTGGTGGTTGTCAGT 317
|||||||||| |||| ||||||||| |||||||||||| ||| ||||||||||| || ||
Sbjct 361 TTGTTATCGGAAACACCTTCGGTGCTTATCTTCTGGCT-TCCTACTTGGTGGTTTTCGGT 419
Query 318 CCCATTTTATATGATTTCTACAACTACGGACC-CGAGGACCGCCAATTCTCTCTTCTATT 376
|| ||| | ||||||||||||||||||||||| | |||| || || ||||||||||| ||
Sbjct 420 CCTATTCTCTATGATTTCTACAACTACGGACCTC-AGGAACGTCATTTCTCTCTTCTGTT 478
Query 377 GACTGAATTCTTACAGAGTGTTGCACTTCTCGGG-GCTTTGCTATTTTTTATCGGAATGA 435
||| || ||||| ||||| |||||||| || || || || || || |||||||||||||
Sbjct 479 GACAGAGTTCTTGCAGAGCGTTGCACT-CTTTGGAGCGTTACTCTTCTTTATCGGAATGA 537
Query 436 AGAATTCGACGACGACCTCCAAGAGGA-TTCTGAAGAAGAGGACTCCCAAGCCTAAAGCT 494
|||| ||||| || || |||||| || || ||||||||||||| || ||||| ||||||
Sbjct 538 AGAACTCGAC-AC--CCGCCAAGAAGAATT-TGAAGAAGAGGACACCTAAGCCGAAAGCT 593
Query 495 GCTTAG 500
|| |||
Sbjct 594 GCCTAG 599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24916136912
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5