BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919111
Length=1189
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04360.1 | Symbols: | RING/U-box superfamily protein | chr1... 1744 0.0
> AT1G04360.1 | Symbols: | RING/U-box superfamily protein | chr1:1167457-1168878
REVERSE LENGTH=1422
Length=1422
Score = 1744 bits (944), Expect = 0.0
Identities = 1116/1198 (93%), Gaps = 15/1198 (1%)
Strand=Plus/Plus
Query 1 ATTTAGA-T-TTTTCTTGTCAAATGGATCTAACAGACCGTCGTAACCCTTTT-ACTAATC 57
||||||| | |||| | ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 205 ATTTAGATTGTTTTGTAGTCAAATGGATCTAACAGACCGTCGTAACCCTTTTAAC-AATC 263
Query 58 TGGTTTTTCCGCCGCCTCCTCCGCCGCCATCGACGACCTTCACAAGCCCTATTTTCCCAC 117
| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 264 TTGTTTTTCCGCCGCCGCCTCCGCCGCCATCCACGACCTTCACAAGCCCTATATTCCCAC 323
Query 118 GAACAAGCTCATCCGGCACGAATTTCCCCATTATCGCCATCGCAGTGATCGGAATCTTAG 177
|||||||||| |||||||| |||||||||||| | |||||||||||||| ||||||||||
Sbjct 324 GAACAAGCTCTTCCGGCACCAATTTCCCCATTCTGGCCATCGCAGTGATTGGAATCTTAG 383
Query 178 CTACTGCGTTCTTGCTTGTAAGTTACTACATCTTCGTGATAAAATGCTGCCTAAATTGGC 237
| ||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 384 CCACTGCGTTCTTACTTGTAAGTTACTACATCTTCGTGATCAAATGCTGTCTTAATTGGC 443
Query 238 ACCAAATCGACATCTTCCGCCGCCGCAGACGAAGCAGTGACCAAAACCCTCTAATGATTT 297
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 ACCAAATCGACATCTTTCGCCGCCGCAGACGAAGCAGTGACCAAAACCCTCTAATGATTT 503
Query 298 ACTCTCCTCATGAAGTAAACAGAGGACTCGACGAATCCGCCATTAGAGCTATCCCAGTCT 357
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 504 ACTCTCCTCATGAGGTAAACAGAGGACTAGACGAATCCGCCATTAGAGCTATCCCAGTCT 563
Query 358 TTAAATTCAAGAAGAGAGACGTTGTTGCAGGAGAAGATGATCAGAATAAGAACTCTCAAG 417
| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 564 TCAAATTCAAGAAGAGAGACGTTGTTGCAGGAGAAGAAGATCAGAGTAAGAACTCTCAAG 623
Query 418 AATGCTCTGTTTGCTTAAACGAGTTTCAAGAAGACGAGAAGCTAAGGATTATTCCCAACT 477
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 624 AATGCTCTGTTTGTTTAAACGAGTTTCAAGAAGACGAGAAGCTAAGGATTATTCCTAACT 683
Query 478 GCTGCCACGTGTTTCACATTGATTGCATTGATATTTGGCTTCAGGGGAACGCTAATTGTC 537
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 684 GCTGCCACGTGTTTCACATTGATTGCATTGATATCTGGCTTCAGGGCAACGCAAATTGTC 743
Query 538 CATTGTGCAGAACCAGCGTTTCTTGCGACGCAAGTTTCTCTCTTGACCTAATCTCTTCAC 597
| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||
Sbjct 744 CCTTGTGCAGAACCAGCGTTTCTTGCGAAGCAAGTTTCACTCTTGACCTAATCTCTGCAC 803
Query 598 CGATCTCTTCC-CCGGAGAATAGCCCTCATTCACGGAATAGGAATCTTGAACCCGGCCTG 656
||| ||| ||| | |||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 804 CGAGCTC-TCCTCGGGAGAATAGCCCTCATTCTCGGAACAGGAATCTCGAACCCGGCCTG 862
Query 657 GTTCTTGGAAGCGATGATGACTTCGTCGTGATCGAGCTTGGGGCCAGTAATGGTAATAAC 716
||||| ||| ||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 863 GTTCTAGGAGGCGATGATGACTTCGTCGTCATAGAGCTTGGGGCCAGTAATGGTAACAAC 922
Query 717 AGGGGAAGCGTGAGAAACAGAGACTTCCTTACGGAACAAGAAAGGGTTGCCTCGAACCAG 776
|| | |||||||||||||| ||||||||||||||| |||||||||||| ||||||| ||
Sbjct 923 AGAGAAAGCGTGAGAAACATAGACTTCCTTACGGAGCAAGAAAGGGTTACCTCGAATGAG 982
Query 777 GTCTCGACCGGAAACAGCTCGAAATCGATGAGCCCTTTGCCTAGAAAGTTTGATAATCGC 836
|||||||||||||||||| |||||||| |||| |||||||||| |||||||| ||||||
Sbjct 983 GTCTCGACCGGAAACAGCCCGAAATCGGTGAGTCCTTTGCCTATAAAGTTTGGTAATCGG 1042
Query 837 GGAATGCATAAGAAAGAGAGCAAATTTCACAAAATGACGAGTATGGGAGACGAATGTATC 896
|||||| |||||||||| || |||||||||||| ||||||||||||||||||||||||||
Sbjct 1043 GGAATGTATAAGAAAGAAAGGAAATTTCACAAAGTGACGAGTATGGGAGACGAATGTATC 1102
Query 897 GATACTCGAGGCAAAGATGGTCATTTTGGTGAAATTCACCCCATAAGAAGATCGATCTCG 956
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1103 GATACTAGAGGCAAAGATGGTCATTTTGGTGAAATTCAGCCCATAAGAAGATCGATCTCG 1162
Query 957 ATGGATTCATCAGTGGATCGTCAGCTGTACTTGGCGGTCCAAGAAGAAATCAGCCGGAGA 1016
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1163 ATGGATTCATCAGTGGATCGTCAGCTGTACTTGGCGGTCCAAGAGGAAATCAGCCGGAGA 1222
Query 1017 AACAGGCAGATTCCGGTAGCTGGAGACAGTGAAGATAGTACTAGCAGTAGTGGTGGTGGT 1076
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1223 AACAGGCAGATTCCGGTAGCTGGAGACGGTGAAGATAGTA---GCAGTAGTGGTGGTGGT 1279
Query 1077 AATAACAGAGTGATGAAGAGATGTTTCTTCTCTTTTGGAAGTAGTAGAACTTCTAAAAA- 1135
|||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1280 AATAGCAGAGTCATGAAGAGATGTTTCTTCTCTTTTGGAAGTAGTAGAACTTC-AAAAAG 1338
Query 1136 TTCCTCAATATTACCTGTTTATTTGGAACCCTAATT--GTATT--CCTCTTTTTCATT 1189
||| |||||||||||||||||||||||||||||||| ||||| |||||| || |||
Sbjct 1339 TTCTTCAATATTACCTGTTTATTTGGAACCCTAATTCTGTATTTTCCTCTTCTTGATT 1396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58383233835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5