BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919112

Length=445
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G04370.1 | Symbols: ATERF14, ERF14 | Ethylene-responsive ele...   590    5e-168


> AT1G04370.1 | Symbols: ATERF14, ERF14 | Ethylene-responsive element 
binding factor 14 | chr1:1175177-1175578 FORWARD LENGTH=402
Length=402

 Score =  590 bits (319),  Expect = 5e-168
 Identities = 378/406 (93%), Gaps = 5/406 (1%)
 Strand=Plus/Plus

Query  21   ATGGACCAAGGAGGTCGTAGCGGTGGGGGTGGAGGAGGAGGAGGAGCCGAGCAAATGAAG  80
            ||||| ||||||||||||||| ||   ||| | |||||||||||||||||||||  ||||
Sbjct  1    ATGGATCAAGGAGGTCGTAGCAGT---GGTAGTGGAGGAGGAGGAGCCGAGCAAGGGAAG  57

Query  81   TACCGTGGAGTAAGGAGACGGCCTTGGGGCAAATACGCAGCAGAAATAAGAGATTCTAGG  140
            |||||||||||||||||||| |||||||| |||||||| || |||||||||||||| |||
Sbjct  58   TACCGTGGAGTAAGGAGACGACCTTGGGGTAAATACGCCGCGGAAATAAGAGATTCGAGG  117

Query  141  AAGCACGGAGAGCGTGTGTGGCTAGGGACATTCGACACTGCAGAAGACGCGGCTCGAGCC  200
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  118  AAGCACGGAGAGCGTGTGTGGCTAGGGACATTCGACACTGCGGAAGACGCGGCTCGAGCC  177

Query  201  TATGACCGAGCCGCCTATTCAATGAGAGGAAAAGCCGCCATTCTCAACTTCCCTCACGAG  260
            ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct  178  TATGACCGAGCCGCCTATTCAATGAGAGGCAAAGCTGCCATTCTCAACTTCCCTCACGAG  237

Query  261  TATAACATGGGAACCGGATCCTCTTCCACTGCAGCTAGTTCTTCTTCCTCGTCG-AGGCA  319
            ||||||||||||||||||||||| |||||||| |||| |||||||||||||||| || ||
Sbjct  238  TATAACATGGGAACCGGATCCTCATCCACTGCGGCTAATTCTTCTTCCTCGTCGCAG-CA  296

Query  320  AGTTATTGAATTTGAGTACTTGGACGATAGCGTTTTGGATGAACTTCTTGAGTATGGAGA  379
            |||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  297  AGTTTTTGAGTTTGAGTACTTGGACGATAGCGTTTTGGATGAACTTCTTGAATATGGAGA  356

Query  380  GAACTATAACAAGACTCATAATATCAACACCGGTAAGAGGCAATAA  425
            |||||||||||||||||||||||||||||  || ||||||||||||
Sbjct  357  GAACTATAACAAGACTCATAATATCAACATGGGCAAGAGGCAATAA  402



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21162722329


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5