BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919118
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04420.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 2074 0.0
> AT1G04420.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr1:1191608-1193884 FORWARD LENGTH=1450
Length=1450
Score = 2074 bits (1123), Expect = 0.0
Identities = 1227/1279 (96%), Gaps = 0/1279 (0%)
Strand=Plus/Plus
Query 1 CGTCCAAGACATTCTCCGGGATGGCGTCATCTTACGTCACCTTCTCAACGGTCACTCCGG 60
|||||| |||| |||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 7 CGTCCACGACAACCTCCGGTATGGCGTCATCTTACGTCACCTACTCAACGGTCACTCCGG 66
Query 61 TGGTCAGCGGCAGCGACACTCGAGGCTTAGCTCGCTTGGAATTCACGCGCCGCCGTGTAA 120
|||||||| |||| ||| |||||| | ||| |||| |||||||||||||||||| |
Sbjct 67 TGGTCAGCAGCAGTAACATTCGAGGAGTCTTTCGTTTGGCATTCACGCGCCGCCGTGTTA 126
Query 121 CTCCATCGCCGAATTCTCGGAGGAGACTATTGAGAATTTCGGCGAAAGCGTCGACGAAGA 180
||| |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 127 CTCTATCGCCGAATGCTCGGAGGAGAATATTGAGAGTTTCGGCGAAAGCGTCGACGAAGA 186
Query 181 ATGCAATGGAGTACAGGAAATTAGGAGATTCCGATCTTAACATCAGTGAAGTTACTATGG 240
|||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 187 ATGCTATGGAGTATAGGAAATTAGGAGATTCCGATCTCAACATCAGCGAAGTTACTATGG 246
Query 241 GCACTATGACATTTGGGGAGCAAAATACTGAGAAAGAATCTCATGAGATGCTGAGTTATG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GCACTATGACATTTGGGGAGCAAAATACTGAGAAAGAATCTCATGAGATGCTGAGTTATG 306
Query 301 CAATTGAAGAGGGCATCAATTGCATTGACACTGCTGAAGCTTATCCCATACCGATGAAGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 CAATTGAAGAGGGCATCAATTGCATTGACACTGCTGAAGCTTATCCCATACCGATGAAGA 366
Query 361 AGGAGACCCAAGGAAAAACGGATCTTTATATCAGTAGCTGGTTGAAGTCTCAGCAACGTG 420
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 AGGAGACGCAAGGTAAAACGGATCTTTATATCAGTAGCTGGTTGAAGTCTCAGCAACGTG 426
Query 421 ACAAGATAGTTTTGGCAACTAAAGTATGTGGGTACTCAGAAAGATCATCTTACATAAGGG 480
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 427 ACAAGATAGTTTTGGCAACTAAAGTATGTGGGTACTCAGAAAGGTCAGCTTACATAAGGG 486
Query 481 ACAGTGGTGAGGTTCTGCGTGTAGATGCTGCTAATATCAAAGAAAGTGTTGAGAAAAGTC 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 ACAGTGGTGAGATTCTGCGTGTAGATGCTGCTAATATCAAAGAAAGTGTTGAGAAAAGTC 546
Query 541 TTAAGCGCCTTGGAACTGATTACATTGATTTGCTTCAAATACACTGGCCAGATCGATACG 600
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 547 TTAAGCGCCTTGGAACTGATTACATTGACTTGCTTCAAATACACTGGCCAGATCGATACG 606
Query 601 TACCACTCTTCGGTGATTTTTACTATGACACATCGAAATGGAGACCTAGTGTGCCATTCG 660
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 607 TACCACTCTTCGGTGATTTTTACTATGAAACGTCGAAATGGAGACCTAGTGTGCCATTCG 666
Query 661 CTGAGCAACTAAGAGCCTTTAAGGATCTCATAGATGAAGGAAAGGTTCGGTACATTGGTG 720
|||||||||||||||||||| |||||||||||| ||||||||||||||| || || ||||
Sbjct 667 CTGAGCAACTAAGAGCCTTTCAGGATCTCATAGTTGAAGGAAAGGTTCGCTATATCGGTG 726
Query 721 TCTCGAATGAAACTTCATATGGAGTGATGGAGTTTGTTAACACAGCAAAACTCGAAGGAC 780
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 727 TCTCGAATGAAACTTCATACGGAGTGACGGAGTTTGTTAACACAGCAAAACTCGAAGGAC 786
Query 781 TACCAAAGATTGTGAGCATCCAGAATGGTTACAGCTTGCTAGTTAGATGTCGGTATGAAG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 TACCAAAGATTGTGAGCATCCAGAATGGTTACAGCTTGCTAGTTAGATGTCGGTATGAAG 846
Query 841 TTGATCTGGTAGAAGTATGCCACCCAAAAAATTGCAATGTTGGCTTGCTTGCTTATTCCC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 TTGATCTGGTAGAAGTATGCCACCCAAAAAATTGCAATGTTGGCTTGCTTGCTTATTCCC 906
Query 901 CTCTTGGAGGCGGCTCGTTGTCTGGGAAATACTTGGTTACAGACCAAGAAGCTACAAAAA 960
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 907 CTCTTGGAGGCGGCTCGTTGTCTGGGAAATACTTGGCTACAGACCAAGAAGCTACAAAAA 966
Query 961 ATGCAAGGCTGAATCTTTTCCCAGGATATATGGAACGTTACAAGGGATCCCTAGCCAAGG 1020
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 967 ATGCAAGGCTGAATCTTTTCCCAGGATATATGGAACGTTACAAGGGATCACTAGCCAAGG 1026
Query 1021 AAGCAACGATACAATACGTGGAGGTGGCGAAGAAGCACGGTTTAACTCCGGTTGAGTTAG 1080
||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1027 AAGCAACCATACAATACGTTGAGGTGGCGAAGAAGTACGGTTTAACTCCGGTTGAGTTAG 1086
Query 1081 CACTTGGGTTTGTACGTGACCGGCCCTTTGTGACAAGCACGATCATTGGGGCCACATCGG 1140
|||| ||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct 1087 CACTCGGGTTTGTACGTGACAGGCCCTTTGTGACGAGCACGATCATCGGGGCCACATCGG 1146
Query 1141 TAGAGCAACTTAAAGAAGACATTGATGCTTTTCTGATGACGGAGCGGCCGTTTTCGCAGG 1200
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 TAAAACAACTTAAAGAAGACATTGATGCTTTTCTGATGACGGAGCGGCCGTTTTCGCAGG 1206
Query 1201 AAGTTATGGCAGACATTGACGCCGTTTTCAAAAGGTTCAAAGACCCTTCTTTCGTTTGAA 1260
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1207 AAGTTATGGCAGACATTGACGCCGTTTTCAAGAGGTTCAAAGACCCTTCTTTCGTTTGAA 1266
Query 1261 AGAAAAGAAGGTTTCTCAT 1279
|||||||||||||||||||
Sbjct 1267 AGAAAAGAAGGTTTCTCAT 1285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62901282885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5