BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919120

Length=581
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G71310.2 | Symbols:  | cobalt ion binding | chr1:26878466-26...   291    7e-78


> AT1G71310.2 | Symbols:  | cobalt ion binding | chr1:26878466-26880024 
REVERSE LENGTH=962
Length=962

 Score =  291 bits (157),  Expect = 7e-78
 Identities = 185/199 (93%), Gaps = 0/199 (0%)
 Strand=Plus/Plus

Query  1    GAATTTTGACCGGCGATTGTAATGGCGGGGTTAGGGTTACGGCTAAAGGCGGCGAAATGG  60
            |||||||| |||||||  | ||||||||||||||||||||||||||||||||| ||||||
Sbjct  160  GAATTTTGTCCGGCGACAGAAATGGCGGGGTTAGGGTTACGGCTAAAGGCGGCAAAATGG  219

Query  61   ATGTTGAGGAGCGGAGCAGCTACTGTATCGAGGGGATGGTCGTCGGAGATGGGGAAGGGT  120
            | ||||||||||||| ||| | |||||||||| | ||||||||||||||||||||| |||
Sbjct  220  ACGTTGAGGAGCGGATCAGGTGCTGTATCGAGAGAATGGTCGTCGGAGATGGGGAAAGGT  279

Query  121  GTTCGTCGCTTCTCTACTGAACCAGAGAACGATGTTCCAACTTCAGGAATCAGTAGACCA  180
            |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  280  GTTCGTCGATTCTCTACTGAAACAGAGAACGATGTTCCAACTTCAGGAATCAGTAGACCA  339

Query  181  CTCGCTGAGATTCTCAAGG  199
            |||||||||||||||||||
Sbjct  340  CTCGCTGAGATTCTCAAGG  358



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27930185732


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5