BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919125

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G33450.1 | Symbols:  | Ribosomal L28 family | chr2:14173579-...   390    5e-108
  AT1G04457.1 | Symbols:  | Pseudogene of AT2G33450; 50S ribosoma...   361    4e-99 


> AT2G33450.1 | Symbols:  | Ribosomal L28 family | chr2:14173579-14174533 
FORWARD LENGTH=626
Length=626

 Score =  390 bits (211),  Expect = 5e-108
 Identities = 310/358 (87%), Gaps = 6/358 (2%)
 Strand=Plus/Plus

Query  84   TCAACGGAGCTCGG-TTCTCTGACTTCCCAACTCAGCGGCGTAAGAATTTCACATGGTTA  142
            |||| |||||| || ||| || || ||||| ||||||||| ||||||| ||| ||  |  
Sbjct  120  TCAAAGGAGCTTGGATTC-CTCACCTCCCAGCTCAGCGGCTTAAGAATCTCATATACTCC  178

Query  143  CAGTGATGCCATCAATCGTAT-AACCTTATCTTCCG-TCCCCTCTCTCCAACCCATCGTC  200
            |||||| | |||||| |||||   ||||  ||| || |||||    | || || ||||||
Sbjct  179  CAGTGACGTCATCAACCGTATCTCCCTT-CCTT-CGTTCCCCGGGATTCAGCCAATCGTC  236

Query  201  GCTCGTAGAATCTGCCCTTTTACGGGGAAGAAAGCAAACAGAGCTAACAAAGTGTCCTTC  260
            || |||||||||||||||||||| |||||||||||||||||||| |||||||| || |||
Sbjct  237  GCACGTAGAATCTGCCCTTTTACTGGGAAGAAAGCAAACAGAGCAAACAAAGTTTCATTC  296

Query  261  TCTAACCACAAGACCAAGAAGTTGCAATTCGTCAACTTGCAATACAAAAAAGTTTGGTGG  320
            |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||
Sbjct  297  TCTAACCACAAGACCAAGAAGTTGCAATTCGTCAACTTACAATACAAGAGAGTTTGGTGG  356

Query  321  GAAGCTGGCAAACGTTTTGTCAAACTTCGTTTATCAACCAAGGCCTTGAAGACCATTGAG  380
            |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct  357  GAAGCTGGCAAACGTTTTGTCAAACTTCGTTTATCAACTAAGGCTTTGAAGACCATTGAG  416

Query  381  AAGAATGGCCTCGATGCTGTTGCCAAGAAAGCTGGCATAGATCTTCGTAAGAAGTAGA  438
            ||||| || ||||| ||||||||||||||||| ||||| |||||||| ||||| ||||
Sbjct  417  AAGAACGGACTCGACGCTGTTGCCAAGAAAGCCGGCATTGATCTTCGCAAGAAATAGA  474


> AT1G04457.1 | Symbols:  | Pseudogene of AT2G33450; 50S ribosomal 
protein L28, chloroplast (CL28) | chr1:1210319-1210549 REVERSE 
LENGTH=231
Length=231

 Score =  361 bits (195),  Expect = 4e-99
 Identities = 219/231 (95%), Gaps = 0/231 (0%)
 Strand=Plus/Plus

Query  207  AGAATCTGCCCTTTTACGGGGAAGAAAGCAAACAGAGCTAACAAAGTGTCCTTCTCTAAC  266
            ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct  1    AGAATCTGCCCTTTTACTGGGAAGAAAGCAAACAGAGCAAACAAAGTGTCATTCTCTAAC  60

Query  267  CACAAGACCAAGAAGTTGCAATTCGTCAACTTGCAATACAAAAAAGTTTGGTGGGAAGCT  326
            ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct  61   CACAAGACCAAGAAGTTGCAATTCGTCAACTTGCAGTACAAAAGAGTTTGGTGGGAAGCT  120

Query  327  GGCAAACGTTTTGTCAAACTTCGTTTATCAACCAAGGCCTTGAAGACCATTGAGAAGAAT  386
            |||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||| 
Sbjct  121  GGCAAACGTTTTGTCATACTTCGGTTATCAACTAAGGCCTTGAAGACCATTGAGAAGAAC  180

Query  387  GGCCTCGATGCTGTTGCCAAGAAAGCTGGCATAGATCTTCGTAAGAAGTAG  437
            || ||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct  181  GGTCTCGAAGCTGTTTCCAAGAAAGCTGGCATAGATCTTCGTAAGAAGTAG  231



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21967006313


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5