BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919129
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04500.1 | Symbols: | CCT motif family protein | chr1:12214... 1975 0.0
AT2G33350.1 | Symbols: | CCT motif family protein | chr2:14133... 468 6e-131
> AT1G04500.1 | Symbols: | CCT motif family protein | chr1:1221433-1224366
REVERSE LENGTH=1616
Length=1616
Score = 1975 bits (1069), Expect = 0.0
Identities = 1157/1201 (96%), Gaps = 0/1201 (0%)
Strand=Plus/Plus
Query 1 ACCATAACGAACACATAAACATGTCGCAGGACGTAATTTCGTCTCATGAGCAGCTCTCTA 60
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 112 ACCATAAAGAACACATAAACATGTCGCAGGACGTAATTTCGTCTCATGAGCAGCTCTCCA 171
Query 61 TGGATGAGATCACAAGCCCTCTCACCGCACAAATCTTCGATTTTTGCGATTCACAGTTAT 120
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 172 TGGATGAGATCACAAGTCCTCTCACCGCACAGATCTTCGATTTCTGCGATTCACAGTTAT 231
Query 121 TTCAAGAAACCTTCAATCAAACTTCTGAAGTGACCTCTGCTTCAAACGGTTGTGGCTATG 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 232 TTCAAGAAACCTTCAATCAAACTTCTGAAGTAACCTCTGCTTCAAACGGTTGTGGCTATG 291
Query 181 TCGAAAACAACAACACCAACAACTTTCCAGACAAATCCAACAGTGGTTCGAATCAGGATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 292 TCGAAAACAACAACACCAACAACTTTCCAGACAAATCCAACAGTGGTTCGAATCAAGATC 351
Query 241 GTGATGATAACAACGACAACGCGGACTTATCGATCATATTTGATTCACAAGATGATTTCG 300
||| || |||||||||||||| || ||||| |||||||| |||||||||||||||||||
Sbjct 352 ATGAAGACAACAACGACAACGCTGATTTATCAATCATATTCGATTCACAAGATGATTTCG 411
Query 301 ATAACGATATCACAGCTTCTATCGATTTCTCTTCATCCATCCAGTTCCCAGTCTCTGATC 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 412 ATAACGATATCACAGCTTCTATCGATTTCTCTTCATCCATCCAGTTCCCAGCCTCCGATC 471
Query 361 AACTCCAAGAGCAGTTTGATTTCACCGGAATTCAACTTCATCAGCCTCCGAACGCTCTCT 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 472 AACTCCAAGAGCAGTTTGATTTCACCGGAATTCAACTTCACCAGCCTCCGAACACTCTCT 531
Query 421 ACTCTTCCTCCTCCGGTGAACTTCTGCCTCCGCCTTTATCGGTTTTCGAAGAGGATTGTC 480
||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 532 ACTCTTCCTCCTCTGGTGACCTTCTGCCTCCGCCTTTATCGGTTTTCGAAGAAGATTGTC 591
Query 481 TTTCTTCTGTCCCAAGTCACAATCTTGGCTCCATAAACCCTTCTTCTCCTTCTTGCTCTT 540
|||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 592 TTTCTTCTGTGCCAAGTTACAATCTTGGTTCCATAAACCCTTCTTCTCCTTCTTGCTCTT 651
Query 541 TTTTGGGTAATACCGGTTTACCGACTTACATGACCGTAACCGGGAATATGATGAACACCG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TTTTGGGTAATACCGGTTTACCGACTTACATGACCGTAACCGGGAATATGATGAACACCG 711
Query 601 GTTTAGGATCTGGTTTTTACTCCGGGAGTATCCATCTCGGTTCTGATTTTAAACCATCAC 660
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 712 GTTTAGGATCTGGTTTTTACTCCGGGAATATCCATCTCGGTTCTGATTTCAAACCATCAC 771
Query 661 ATGATCAATTGATGGAAATTCAGGCTGATAATGGTGGATTGTTCTGTCCAGATCCGATTA 720
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 772 ATGATCAATTGATGGAAATTCAAGCTGATAATGGTGGATTGTTCTGTCCAGATCCGATTA 831
Query 721 AACCCATCTTCAATCCAGGAGATCATCATCTCCAGGGACTTGACGGTGGCGAGAACCAGA 780
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 832 AACCCATCTTTAATCCAGGAGATCATCATCTCCAGGGACTTGACGGTGTCGAGAACCAGA 891
Query 781 ACCACATGGTGGCACAGCCGGTTCTTCCGCAGTTAGGGACGGAGATAACCGGTTTAGACG 840
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 892 ACCACATGGTGGCACAGCCGGTTCTCCCGCAGTTAGGGACGGAGATAACCGGTTTAGACG 951
Query 841 ACCCGAGTTTCAACAAAGTTGGAAAACTCTCCGCGGAGCAGAGGAAAGAAAAGATTCATA 900
||||||||||||||||||| ||||||||||| || |||||||| ||||| ||||||||||
Sbjct 952 ACCCGAGTTTCAACAAAGTCGGAAAACTCTCGGCAGAGCAGAGAAAAGAGAAGATTCATA 1011
Query 901 GGTACATGAAGAAGAGAAACGAGAGGAATTTCAGCAAGAAAATCAAGTATGCATGTAGAA 960
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1012 GGTATATGAAGAAGAGGAACGAGAGGAATTTCAGCAAGAAAATCAAGTATGCATGTAGGA 1071
Query 961 AGACATTGGCAGATAGTCGTCCAAGAGTTAGAGGAAGATTTGCAAAGAATGATGAATTTG 1020
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 AGACGTTGGCAGATAGTCGTCCAAGAGTTAGAGGAAGATTTGCAAAGAATGATGAATTTG 1131
Query 1021 GTGAACCAAATAGACAAGCTTGTTCAAGCCATCATGAAGAAGATGATGATGATGTGGGGG 1080
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1132 GTGAACCAAATAGACAAGCCTGTTCAAGCCATCATGAAGATGATGATGATGATGTGGGGG 1191
Query 1081 TAAAGGAAGAAGAACAATTAGTTGATTCTTCGGACATATTTTCACACATAAGTGGTGTGA 1140
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 TAAAGGAAGAAGAACAGTTAGTTGATTCTTCGGACATATTTTCACACATAAGTGGTGTGA 1251
Query 1141 ACTCTTTCAAATGCAATTATCCAATTCAGTCTTGGATTTGAGTTGGATTACTTACATGGT 1200
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1252 ACTCTTTCAAATGCAATTATCCAATCCAGTCTTGGATTTGAGTTGGATTACTTACTTGGT 1311
Query 1201 C 1201
|
Sbjct 1312 C 1312
> AT2G33350.1 | Symbols: | CCT motif family protein | chr2:14133929-14137154
FORWARD LENGTH=1738
Length=1738
Score = 468 bits (253), Expect = 6e-131
Identities = 591/746 (79%), Gaps = 56/746 (8%)
Strand=Plus/Plus
Query 461 GGTTTTCGAAGAGGATTGTCTTTCTTCTGTCCCAAGTCACAATCTTGGCTCCATAAACCC 520
|||||||||||| |||||||||||||| ||||||||| |||||||||| | | |||||
Sbjct 712 GGTTTTCGAAGAAGATTGTCTTTCTTCAGTCCCAAGTTACAATCTTGG-T--TTGAACCC 768
Query 521 TTCTT-CTCCTTCTTGCTCTTTTTTGGGTAATACCGGTTTACCGACTTACATGACCGTAA 579
||||| ||| ||||| | | || | | ||||||||||| | || |||| || |
Sbjct 769 TTCTTGCTCTTTCTT-C-C---GTT-CG---T-CCGGTTTACCGGCGTATATGA--GT-A 815
Query 580 CCGGGAATATGATGAACACCGGTTTAG-GATCT-GGTT-T-TTACTCCGGGAGTATCCAT 635
|| || | | || | | | | || |||| |||| | || | |||||| ||| |||
Sbjct 816 CC-GG--T-TTATTATCTGCTG-AAAGTAATCTCGGTTATCTT-C-CCGGGAATATTCAT 868
Query 636 CTCGGTTCTG-ATTTTA-AACCATCACATGATCAATTGATGGAAATTCAGGCTGATAATG 693
| || || | | | | || | ||||||||| | ||||||| |||| ||||||||||
Sbjct 869 GTGGGATCAGAAATCAATAAGC--CACATGATCCACTGATGGACTTTCAAGCTGATAATG 926
Query 694 GTGGATTGTTCTGTCCAGA-TCCGATTAAACCCATCTTCAATCCAGGAGATCATCATCTC 752
|||| || || ||||| || ||| || |||| || || ||||||| ||||| || |
Sbjct 927 GTGGTTTTTTTTGTCCGGATTCC-ATCAAACGTATGTTTAATCCAGAAGATC-TC--CAG 982
Query 753 CAGGGACTTGACGGT-G-G-CGAGAACCAGAACCACATGGTGGCACAGCCGGTTCTTCC- 808
||| ||||| ||| | | ||||||||||| |||| ||||| ||| | | || |||
Sbjct 983 AAGGCACTTGGTGGTGGCGCCGAGAACCAGAGCCACTTGGTGACACCTCAAGCTCATCCA 1042
Query 809 GCAGTTAGGGA-C-G--GAGATAACCGGTTTAGACGACCCGA-GTTTCAACAAAGTTGGA 863
||| ||| ||| | | || |||| ||||||||| ||| | | | || ||||||||||||
Sbjct 1043 GCA-TTA-GGACCGGTCGATATAAACGGTTTAGAAGACTCAACG-TTGAACAAAGTTGGA 1099
Query 864 AAACTCTCCGCGGAGCAGAGGAAAGAAAAGATTCATAGGTACATGAAGAAGAGAAACGAG 923
||||||||| | ||||| |||||||| ||||||| |||||||||||||||||| |||||
Sbjct 1100 AAACTCTCCCCTGAGCAAAGGAAAGAGAAGATTCGTAGGTACATGAAGAAGAGGAACGAA 1159
Query 924 AGGAATTTCAGCAAGAAAATCAAGTATGCATGTA-GAAAGACATTGGCAGATAGTCGTCC 982
|||||||||| |||||||||||||||||| |||| |||| ||||||||||||||||| ||
Sbjct 1160 AGGAATTTCAACAAGAAAATCAAGTATGCGTGTAGGAAA-ACATTGGCAGATAGTCGACC 1218
Query 983 AAGAGTTAGAGGAAGATTTGCAAAGAATGATGAATTTGGTGAACCAAATAGACAAGCTTG 1042
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1219 AAGAGTTAGAGGAAGATTTGCAAAGAATGATGAATTTGGTGAGCCAAATAGACAAGCTTT 1278
Query 1043 TTCAAGCCATCATGA--A-GAAGATGATGATGATGTGGGGGTAAAGGAAGAAGAACAATT 1099
||||||||||||||| | |||||||| || ||| |||| || ||||| || ||||||||
Sbjct 1279 TTCAAGCCATCATGATGATGAAGATGAAGACGATATGGGAGTGAAGGATGAGGAACAATT 1338
Query 1100 AGTTGATTCTTCGGACATATTTT-CACACATAAGTGGTGTGAACTCTTTCAAATGCAATT 1158
|| |||||||| ||||| |||| ||||||| ||||| | || || ||||| ||||| |
Sbjct 1339 GGTAGATTCTTCAGACAT-TTTTGCACACATTAGTGGAGCAAATTCCTTCAAGTGCAACT 1397
Query 1159 ATCCAATTCAGTCTTGGATTTGAGTT 1184
| ||||| || |||||||||||||||
Sbjct 1398 ACCCAATCCAATCTTGGATTTGAGTT 1423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58985640375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5