BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919135

Length=1647
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G02620.1 | Symbols:  | Ras-related small GTP-binding family ...   422    7e-117
  AT1G01355.1 | Symbols:  | Putative endonuclease or glycosyl hyd...   117    4e-25 


> AT1G02620.1 | Symbols:  | Ras-related small GTP-binding family 
protein | chr1:557092-557986 FORWARD LENGTH=687
Length=687

 Score =  422 bits (228),  Expect = 7e-117
 Identities = 242/249 (97%), Gaps = 0/249 (0%)
 Strand=Plus/Minus

Query  400  TGTGACTGCTTATCTGATGGAGAGCGATATGATGAGTCGCGATCAGCCGTGGACGGACGA  459
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct  687  TGTGACTGCTTATCTGATGGAGAGCGATATGATGAGTCGCGATCAGCCCTGGACAGACGA  628

Query  460  GCGGCCTCCACTTCCTACAGATTTATCAACAAGACTCGCTAAATTGAAAGACTTGGAGGC  519
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  627  GCGGCCTCCACTTCCTACAGATTTATCAACAAGACTCGCTAAATTGAAAGACTTGGAGGC  568

Query  520  TGTAAAGTACGAGGGTGAGTCGTTTGTCTATTGGGACATCAAGTTGTGTCCGCTTCCCCC  579
            ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  567  TGTGAAGTACGAGGGTGAGTCGTTTGTCTATTGGGACATCAACTTGTGTCCGCTTCCCCC  508

Query  580  CTACTGTGATGCTAGTCTGGTCGGTCCGCGCATCAAACTCTTCCTGAAGAATGAAGGCTT  639
             ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct  507  ATACTGTGATGCTAGTCTGGTCGGTCCGCGCAGCAAACGCTTCCTGAAGAATGAAGGCTT  448

Query  640  CTCTGGTCC  648
            |||||||||
Sbjct  447  CTCTGGTCC  439


> AT1G01355.1 | Symbols:  | Putative endonuclease or glycosyl hydrolase 
| chr1:138513-139568 FORWARD LENGTH=687
Length=687

 Score =  117 bits (63),  Expect = 4e-25
 Identities = 113/136 (83%), Gaps = 8/136 (6%)
 Strand=Plus/Plus

Query  1025  GTCGGTCCGTGTATTAAACGGTTTTTGGAG-AATAAAGGCTACTCTGGTCCTCTCACCAT  1083
             |||||||||||||| ||||||  ||||||| |||  ||||||||||||||||||||||||
Sbjct  64    GTCGGTCCGTGTATAAAACGGGCTTTGGAGAAAT-TAGGCTACTCTGGTCCTCTCACCAT  122

Query  1084  CACTGCCAT-GGGCGCACTAGA-AGACGTCCCTAATGACATCCTGAGAGGAA-TCTATTC  1140
             ||||||| | |||   |||| | |||||||||| ||||| |||| |||  || || ||||
Sbjct  123   CACTGCCGTTGGGAT-ACTA-ACAGACGTCCCTCATGACTTCCTCAGAC-AAGTCCATTC  179

Query  1141  CAGTGGAATCTCTCTT  1156
             |  ||||||| |||||
Sbjct  180   CTCTGGAATCGCTCTT  195



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 81375083445


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5