BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919137
Length=619
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02580.1 | Symbols: MEA, EMB173, FIS1, SDG5 | SET domain-con... 414 4e-115
> AT1G02580.1 | Symbols: MEA, EMB173, FIS1, SDG5 | SET domain-containing
protein | chr1:544783-549202 FORWARD LENGTH=2291
Length=2291
Score = 414 bits (224), Expect = 4e-115
Identities = 283/312 (91%), Gaps = 2/312 (1%)
Strand=Plus/Plus
Query 278 GGGGATTAAGACGTGCCTAGAGGTTTACAATTACATGTGTGAACATGATCAACGTACTGT 337
|||| ||||||||||||||||| |||||||||||||| | ||||| |||||| ||||| |
Sbjct 1126 GGGGCTTAAGACGTGCCTAGAGATTTACAATTACATGCGCGAACAAGATCAATGTACTAT 1185
Query 338 GTCATTAGACCTTAACAAACCTAGAGAAAAACACAAGCAGGTTAACAAAAAAGTATCTCG 397
||||||||||||||||||| ||| | ||| |||||| ||||||| |||||||||||||||
Sbjct 1186 GTCATTAGACCTTAACAAAACTACACAAAGACACAATCAGGTTACCAAAAAAGTATCTCG 1245
Query 398 AAAAAGTAGTAGGTCAGTCCGCAAAAAATCCAGACTTGGAAAATATGCTCGTTGTCCGCC 457
||||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct 1246 AAAAAGTAGTAGGTCGGTCCGCAAAAAATCGAGACTCCGAAAATATGCTCGTTATCCGCC 1305
Query 458 TGCTTTAAAGAAAACAACTAATGGAGAAGCTCAGTTTTATAAGCACTACACACCATGCAC 517
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1306 TGCTTTAAAGAAAACAACTAGTGGAGAAGCTAAGTTTTATAAGCACTACACACCATGCAC 1365
Query 518 TTGCGCA-TCAAAATGTGGAGATCAATCCCCTTGTTTAACTAATGAAAATTGTTGCGAGA 576
|||| | |||||||||||| | |||| ||||||||||||| | |||||||| |||||||
Sbjct 1366 TTGCA-AGTCAAAATGTGGACAGCAATGCCCTTGTTTAACTCACGAAAATTGCTGCGAGA 1424
Query 577 AATATTGCGGGT 588
||||||||||||
Sbjct 1425 AATATTGCGGGT 1436
Score = 316 bits (171), Expect = 1e-85
Identities = 228/254 (90%), Gaps = 9/254 (4%)
Strand=Plus/Plus
Query 26 GGAAAGATTCAATGAGCTTAAGCTTAAGAATGATGGAACAGTTGGTGAGGCTTCTGATTT 85
|||||||| |||||| || |||||||||||||||||||| | ||||||||||||||||||
Sbjct 706 GGAAAGATACAATGAACTCAAGCTTAAGAATGATGGAACTGCTGGTGAGGCTTCTGATTT 765
Query 86 CACATCCAAGATAATAACTACTGCTTTTCAGAATTTTGCTGATAGACGTCATTGCCGTCG 145
|||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 766 GACATCCAAGACAATAACTACTGCTTTCCAGGATTTTGCTGATAGACGTCATTGCCGTCG 825
Query 146 TTGCTTGATATTTGATTGTCATATGCATGAGAAGTATGAGCCAACCATTGCTTTGGCTTT 205
|||| ||||||| ||||||||||||||||||||||||||||| | | | || | |
Sbjct 826 TTGCATGATATTCGATTGTCATATGCATGAGAAGTATGAGCC--CGAGT-CTA-GA-TC- 879
Query 206 TCAGAGCGAAGACAAATCTAGTTTGTTTGAGGATGAAGATAGACAACCATGCACTGAGCA 265
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 880 -CAG--CGAAGACAAATCTAGTTTGTTTGAGGATGAAGATAGACAACCATGCAGTGAGCA 936
Query 266 TTGTTACCTCAAGG 279
||||||||||||||
Sbjct 937 TTGTTACCTCAAGG 950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29839083318
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5