BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919141
Length=1669
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04570.1 | Symbols: | Major facilitator superfamily protein... 2678 0.0
> AT1G04570.1 | Symbols: | Major facilitator superfamily protein
| chr1:1246728-1248775 REVERSE LENGTH=1935
Length=1935
Score = 2678 bits (1450), Expect = 0.0
Identities = 1602/1675 (96%), Gaps = 11/1675 (1%)
Strand=Plus/Plus
Query 1 GTTTTCATCTCCCTGAAACAATGGAAAGAATCATGATAAATCCATTGTTCTCAATCCAAA 60
||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 156 GTTTTCATCTCTCTGAAACAATGGAAAGAATTATGATAAATCCATTGTTATCAATTCAAA 215
Query 61 ACTCCCCAACCAAGTTCTTGAAACCACCACTTTCGTCCATTCACAGGCGAA-AGCAACTA 119
|||||||||||||||||||||||||||||||||||||||||||||||| || | |||| |
Sbjct 216 ACTCCCCAACCAAGTTCTTGAAACCACCACTTTCGTCCATTCACAGGC-AACAACAACAA 274
Query 120 CAAGAGAGGCGGAGCAATAACAATACCCTATTCATGGTGGATA-CCAAACCAAGAAGGGC 178
|||||||||| |||||||||||||||||| ||||||| ||| | ||| ||||||||| ||
Sbjct 275 CAAGAGAGGCAGAGCAATAACAATACCCTTTTCATGGGGGA-AGCCAGACCAAGAAGAGC 333
Query 179 GACGACACTCGCATGTCTCTCGATAAGGAGAAGGAGAAACAACAATGGTGTGTCTGAATT 238
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 GACCACATTCGCATGTCTCTCGATAAGGAGAAGGAGAAACAACAATGGTGTGTCTGAATT 393
Query 239 TGAAGAAACGGCGAGGTTTGAACAAGTGGGTGGTAAAGGAATCTCGGTTTTGTGTGGGTT 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 394 TGAAGAAACGGCGAGGTTTGAACAAGTGGGTGGTAAAGGAATCTCGGTTTTGTGCGGGTT 453
Query 299 AGGTTATTGGGTACAAGGATCAAGATGTTTCCCATGGCTTGCTCTTAACTTCCATATGGT 358
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 454 AGGTTATTGGGTACAAGGATCAAGATGTTTCCCATGGCTTGCACTTAACTTCCATATGGT 513
Query 359 TCATAGCCTCGCACTCCAACCATCCACTCTTCAGCTTGTGCAATACTCTTGCAGTCTTCC 418
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 514 TCATAGCCTCGCACTCCAACCATCGACGCTTCAGCTTGTGCAATACTCTTGCAGTCTTCC 573
Query 419 CATGGTGGCTAAACCTCTCTACGGTGTTCTCTCAGATGTTCTTTACATTGGAAGTGGTCG 478
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 574 CATGGTGGCTAAACCTCTCTACGGTGTGCTCTCAGATGTTCTTTACATTGGAAGTGGTCG 633
Query 479 TAGAATTCCTTACATCGCCATTGGAGTGTTTCTGCAGGTTTTAGCATGGGGTTCAATGGG 538
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 TAGAGTTCCTTACATCGCCATTGGAGTGTTTCTGCAGGTTTTAGCATGGGGTTCAATGGG 693
Query 539 GATATTTCAAGGAGCTAGAGAAGTTCTTCCTTCTCTTGTGGCATTTGTCCTGCTTAGCAA 598
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 694 GATATTTCAAGGAGCTAGAGAAGTTCTTCCTTCTCTTGTGGCATGTGTCCTGCTTAGTAA 753
Query 599 CCTTGGAGCATCCATCACTGAGGTTGCAAAAGACGCTCTTGTTGCGGAATATGGTCTGAG 658
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 754 CCTTGGAGCATCCATCACTGAGGTTGCAAAAGACGCTCTTGTTGCGGAATACGGTCTGAG 813
Query 659 ATACCAAATAAACGGTCTCCAGTCTT-TCGCGCTCATGGCTTCAGCAGCTGGTGGAGTCC 717
||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 814 ATACCGAATAAACGGTCTCCAGTCTTAT-GCGCTCATGGCTTCAGCAGCTGGTGGAGTCC 872
Query 718 TTGGAAACTTACTTGGAGGATATCTCTTACTCACAACACCTCCTAAGATCTCCTTTCTTG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 TTGGAAACTTACTTGGAGGATATCTCTTACTCACAACACCTCCTAAGATCTCCTTTCTTG 932
Query 778 TATTCGCTGGTTTGTTGTCTCTGCAGCTTGTTGTTTCTTTATCTTCCAAAGAAGAATCTT 837
||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 933 TATTCTCTGCTTTGTTGTCTCTGCAGCTCGTTGTTTCTTTATCTTCCAAAGAAGAATCTT 992
Query 838 TCGGCCTACCACGGTTAGCAGAGACAAGCTCGGTTTTGGAGAGCGTCAAAAAACAGATAT 897
||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 993 TCGGCTTACCACGGATAGCAGAGACAAGCTCGGTTTTGGAGAGCGTCAAGAAACAGATAT 1052
Query 898 CAAATCTTAAGGAAGCAATTCAGGCAGATGAAATCTCCCAGCCTCTTATTTGGGCAGTAG 957
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1053 CGAATCTTAAGGAAGCAATTCAGGCAGATGAAATCTCCCAGCCTCTGATTTGGGCAGTAG 1112
Query 958 TATCCATTGCAATGGTCCCTCTTCTCTCGGGATCAGTCTTCTGTTACCAAACTCAAGTTC 1017
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1113 TATCCATTGCAATGGTCCCTCTTCTCTCAGGATCAGTCTTCTGTTACCAAACTCAAGTTC 1172
Query 1018 TAAATCTTGATCCTTCGGTTATTGGAATGTCGAAAGTGATAGGACAATTGATGCTTCTTT 1077
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1173 TGAATCTTGATCCTTCGGTTATTGGAATGTCGAAAGTGATTGGACAGTTGATGCTTCTTT 1232
Query 1078 GTCTAACCGTGGTCTATGATCGATACTTGAAGACACTTCCCATGAGACCACTGATCCATA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 GTCTAACCGTGGTCTATGATCGATACTTGAAGACACTTCCCATGAGACCACTGATCCATA 1292
Query 1138 TCATCCAACTCTTGTACGGTCTATCGATTCTCCTCGACTTT-ATCTTGGTGAAGCAAATA 1196
|||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||
Sbjct 1293 TCATCCAACTCTTGTACGGTTTATCGATTCTCCTCGA-TTACATCTTGGTGAAGCAAATA 1351
Query 1197 AATCTCGGATTTGGAATCTCCAATGAGATTTATGTGTTGTGTTTCTCCAGCTTAGCAGAA 1256
||||||||||||||||||||||| ||| |||||||| ||||||| |||||| ||||||||
Sbjct 1352 AATCTCGGATTTGGAATCTCCAACGAGGTTTATGTGCTGTGTTTTTCCAGCCTAGCAGAA 1411
Query 1257 ATCCTTGCACAGTTTAAGATCCTTCCGTTTGCAGTCAGATTAGCCAGTATGTGTCCACAG 1316
||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1412 ATCCTAGCACAGTTTAAGATCCTTCCATTTGCAGTCAGATTAGCAAGTATGTGTCCACAG 1471
Query 1317 GGGTGTGAAGGATCAGTCACATCTTTTCTTGCTTCAACTCTGTGTCTATCACAAATAGTT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 GGGTGTGAAGGATCAGTCACATCTTTTCTTGCTTCAACTCTGTGTCTATCACAAATAGTT 1531
Query 1377 AGCGCATTCTTAGGGGTCGGATTGGCTAATCTGATCGGTATAACATCAAGTAACTATTCA 1436
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 AGTGCATTCTTAGGCGTCGGATTGGCTAATCTGATCGGTATAACATCAAGTAACTATTCA 1591
Query 1437 AACTTGTCTTCAGGGATTCTCATACAGTCTCTAGCAGCTTTGATGCCTTTGTGCTTCATG 1496
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1592 AACTTGTCTTCAGGGATTCTCATACAGTCTCTAGCAGCTCTGGCACCTTTGTGCTTCATG 1651
Query 1497 CACTTTGTGCCAATGTCAGAACCTGTGATTGAGAAAGAAAGAAAAAGAGGTATAAGTAAG 1556
||| ||||||||||||||||||||||||||||||||||| | || |||||||| ||||||
Sbjct 1652 CACCTTGTGCCAATGTCAGAACCTGTGATTGAGAAAGAAGGCAAGAGAGGTATTAGTAAG 1711
Query 1557 AGAAGCAGGAGAAACAGACGAGTCGGGAGAGTAGTCGATAAAGAAAATGTTGAAT-ATCG 1615
|||||||||||||||||||||||||||||||||||||||||||||| |||| | | | ||
Sbjct 1712 AGAAGCAGGAGAAACAGACGAGTCGGGAGAGTAGTCGATAAAGAAAGTGTT-ACTTACCG 1770
Query 1616 ACGGGAAAGAGAGTCAGAAGAAGCACAAAGATAGTGCAA-GTATAGTTAAATCAC 1669
|||||||||||||||||||||||||||||| ||||| || ||||||||| |||||
Sbjct 1771 ACGGGAAAGAGAGTCAGAAGAAGCACAAAGGTAGTGTAAAGTATAGTTACATCAC 1825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82479495435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5