BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919143
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04590.2 | Symbols: | BEST Arabidopsis thaliana protein mat... 1722 0.0
> AT1G04590.2 | Symbols: | BEST Arabidopsis thaliana protein match
is: Pentatricopeptide repeat (PPR) superfamily protein
(TAIR:AT4G18975.4); Has 111 Blast hits to 111 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI
BLink). | chr1:1258578-1261425 REVERSE LENGTH=1351
Length=1351
Score = 1722 bits (932), Expect = 0.0
Identities = 1109/1191 (93%), Gaps = 26/1191 (2%)
Strand=Plus/Plus
Query 12 CCGTCTCCAATGGCGGCGGGTTTCAGTTCTCTAATTCCGAGAACGCCTCTGAAACGCGCC 71
||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 6 CCGTCTCCAAT---GGCGGGTTTCAGTTCTCTAATTCCTAGAACGCTTCTGAAACGCGCC 62
Query 72 GTTAGTAGTGCAACCGGATACCTAACGGCGCCGTTAGCTTCTATTTCGA-CAGCAAGAAA 130
|||||||| ||||| || | |||||||||||||||||||||||||| | ||||||||||
Sbjct 63 GTTAGTAGCGCAACAAGAAATCTAACGGCGCCGTTAGCTTCTATTTC-AGCAGCAAGAAA 121
Query 131 TCTCTTCGCTGGAGGAGCATGTGACGAGATTTATGGTGAGCCAGGAGGGTTTCCTCATTC 190
||||||| |||||||| ||||||||| | ||||||||||||||||| |||| |||||||
Sbjct 122 TCTCTTCATTGGAGGAGGATGTGACGAAAATTATGGTGAGCCAGGAGTGTTTTCTCATTC 181
Query 191 CAGTGGAATAAGAAGGTACAACACCGTTGGTAATTCTGCCGCACTAACTGGTCCATTTCA 250
|| ||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 182 CAATGGAATAAGAAAGTACAACACCGTTGGTAATGCTGGCGCACTAACTGGTCCATTTCA 241
Query 251 TCATCTTCTTAGGGTCAACCAGACAAACAAGCCCGCCTTTTTAAGGGTCCAATCGATGAG 310
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 242 TCATCTTCTTGGGGTCAACCAGACAAACAAGCCCGCCTTTTTAAGGGTCCAATCTATGAG 301
Query 311 CTATCAGTTTGTGGCTGATTCTCATACATCTCCTAAACGTATTGTGAAGACTGAGGATGA 370
|||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 302 CTATCAGTTTGTCGCTGATTCTCATTCATCTCCTAAACGTATTGTGAAGAATGAGGATGA 361
Query 371 GGAAGATTTTTCTGATTCATCAAAGAAGGAAAACGCTGAAACCCCTAGGAAACATCAAAT 430
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 362 GGAAGATTTTTCTGATTCATCAAAGAAGGGAAACGCTGAAAACCCTAGGAAACATCAAAT 421
Query 431 TGGGGAGAACATACCCAAGAAGGATAAAATAAAGTTTCTTGTGAACACTCTTCTTGACAT 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 422 TGGGGAGAACATACCCAAGAAGGATAAAATAAAGTTTCTTGTGAACACTCTTCTTGATAT 481
Query 491 GGAAGATAATAAAGAGGCTGTTTATGGAGCTCTGGATGCTTGGGTTGCTTGGGAGCGCAA 550
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TGAAGATAATAAAGAGGCTGTTTATGGAGCTCTGGATGCTTGGGTTGCTTGGGAGCGCAA 541
Query 551 TTTCCCCATTGCTTCCCTAAAAAGAGTAATAGCTATTCTTGAAAAGGAACATCAATGGCA 610
|||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct 542 TTTCCCCATTGCTTCCCTCAAAATAGTAATAGCTAGTCTTGAAAAGGAACATCAATGGCA 601
Query 611 TCGAATGATCCAGGTGATAAAGTGGATCCTAAGTAAGGGACAAGGGAACACGATGGGGAC 670
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TCGAATGGTCCAGGTGATAAAGTGGATCCTAAGTAAGGGACAAGGGAACACGATGGGGAC 661
Query 671 GTATGGACAGTTGATACGGGCATTAGATATGGATCGTAGAGCAGAAGAGGCTCATGTTAT 730
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 662 GTACGGACAGTTGATACGGGCGTTAGATATGGATCGTAGAGCAGAAGAGGCTCATGTTAT 721
Query 731 CTGGCGAAAGAAAATTGGGAACGATCTGCATTCTGTGCCTTGGCAATTATGCTTACAAAT 790
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 CTGGCGAAAGAAAGTTGGGAACGATCTGCATTCTGTGCCTTGGCAATTATGCTTACAAAT 781
Query 791 GATGCGCATATATTTCCGGAACAACATGTTACAAGAACTTGTTAAGCT-AT-----T-T- 842
||||||||||||||||||||||||||||||||| |||||||||||| | || | |
Sbjct 782 GATGCGCATATATTTCCGGAACAACATGTTACAGGAACTTGTTAAGGTTATGAAGCTATT 841
Query 843 -AAGGATCTGGAGAGTTATGACCGTAAGCCTCCGGACAAGCACATAGTGCAGACCGTGGC 901
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 842 CAAGGATCTGGAGAGTTATGACCGTAAGCCTCCGGACAAGCACATTGTGCAGACCGTGGC 901
Query 902 TGATACTTATGAGCTTTTAGGAATGCTTGATGAGAAAGAACGGGTAATGACGAAGTATAG 961
|||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 902 TGATGCTTATGAGCTTTTGGGAATGCTTGATGAGAAAGAACGGGTAGTGACGAAGTATAG 961
Query 962 CCACCTTTTACTTGGTACAGCATCCGATGATAAACAAAGAAGATCCTCGAGGAAGAAAAA 1021
||| ||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||| ||
Sbjct 962 CCATCTTTTACTTGGTACACCATCCGATGATAAACCAAGTAGATCTTCGAGGAAGAAGAA 1021
Query 1022 GAAACCAGAACTGAGGATTCCTGAAGCAACGACAGAAGACGCA----A--CA--AAA-GC 1072
||||||||||||||||||||| |||||||||||||||| |||| | || ||| ||
Sbjct 1022 GAAACCAGAACTGAGGATTCCAGAAGCAACGACAGAAGGCGCAGTTGATGCAGCAAAAGC 1081
Query 1073 TGAGTTACAAGAAGAGCTAAAAGAAAATCTGGATAATCACCAAGAATCAGAAGCTACCAC 1132
||| | |||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1082 TGAAATCCAAGAAGAGCGAAAAGAAAATCTGGATAATCACCAAGAATCAGAAGCTGCCAC 1141
Query 1133 TGAGAAACAATCCGAACATGGAGCGTTAATTTGTAGTATT-AATTCGATAA 1182
||| ||||||| |||||||||||||| || |||||||||| ||| ||||||
Sbjct 1142 TGAAAAACAATTCGAACATGGAGCGT-AAGTTGTAGTATTTAAT-CGATAA 1190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60391255635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5