BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919156
Length=1340
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04680.1 | Symbols: | Pectin lyase-like superfamily protein... 2111 0.0
> AT1G04680.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:1303529-1307884 REVERSE LENGTH=1923
Length=1923
Score = 2111 bits (1143), Expect = 0.0
Identities = 1275/1340 (95%), Gaps = 3/1340 (0%)
Strand=Plus/Plus
Query 1 GCTCAGCTTCTGCTTCTCCAATGGCGGTTCTTCCGACATGGCTTTTAGCAATGATGTGTC 60
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 GCTCAGCTTCTGCCTCTCCAATGGCGGTTCTTCCGACATGGCTTTTAGCAATGATGTGTT 144
Query 61 TACTCTTCTTCGCCGGAGCAATGGAGAAGAACACTACACACGACAAAATCTCATCTATCC 120
|||||||||||| |||||| || | | ||||||||||||||||||| ||||| ||| |||
Sbjct 145 TACTCTTCTTCGTCGGAGCTAT-G-G-AGAACACTACACACGACAACATCTCTTCTCTCC 201
Query 121 CTAGATCCGACGAAAACGAATGGAACCAACACGCAGTGACGAATCCAGATGAAGTAGCGG 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 CTAGATCCGACGAAACCGAATGGAACCAACACGCAGTGACGAATCCAGATGAAGTAGCGG 261
Query 181 ACGAAGTTCTCGCCTTGACAGAAATGAGTGTGAGAAACCATACCGAGAGGAGGAAACTAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 ACGAAGTTCTCGCCTTGACAGAAATGAGTGTGAGAAACCATACCGAGAGGAGGAAACTAG 321
Query 241 GTTACTTTACTTGCGGAACAGGCAACCCTATCGACGATTGTTGGCGATGCGATCGCAATT 300
|||||||||||||||||||||| |||||||||||||||||||||||||| || | |||||
Sbjct 322 GTTACTTTACTTGCGGAACAGGAAACCCTATCGACGATTGTTGGCGATGTGACCCCAATT 381
Query 301 GGCACAAGAACCGCAAACGCCTAGCGGATTGCGGTATCGGATTTGGAAGAAACGCTATCG 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 382 GGCACAAGAACCGTAAACGCCTAGCGGATTGCGGTATCGGATTTGGAAGAAACGCGATCG 441
Query 361 GTGGTCGTGATGGACGTTTCTACGTAGTCACTGACCCAAGAGACGACAATCCGGTTAACC 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 GTGGTCGTGATGGACGATTCTACGTAGTCACTGACCCAAGAGACGACAATCCGGTTAACC 501
Query 421 CTAGACCTGGGACATTACGTCACGCCGTGATCCAAGACCGACCACTATGGATCGTTTTCA 480
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 CTAGACCGGGGACTTTACGTCACGCCGTGATCCAAGACCGACCACTATGGATCGTTTTCA 561
Query 481 AACGTGATATGGTGATTCAGTTAAAACAAGAGCTTATCGTTAACAGCTTCAAAACGATCG 540
||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 562 AACGTGACATGGTGATTCAGCTAAAACAAGAGCTTATCGTTAACAGTTTCAAAACGATCG 621
Query 541 ATGGACGTGGCGCAAACGTTCACATCGCTAATGGCGGTTGCATCACGATTCAGTTTGTGA 600
||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 622 ATGGACGTGGCGCAAACGTTCACATTGCTAACGGTGGTTGCATCACGATTCAGTTTGTGA 681
Query 601 CGAATGTGATCGTTCACGGATTGCATATTCATGACTGTAGACCGACCGGTAACGCTATGG 660
||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||
Sbjct 682 CGAATGTGATCGTTCACGGATTGCATATTCATGACTGTAAACCAACTGGTAACGCTATGG 741
Query 661 TGAGAAGCTCAGAGACGCACTTTGGATGGAGGACGATGGCCGATGGTGACGCGATTTCTA 720
||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||| |
Sbjct 742 TGAGAAGCTCAGAGACGCATTTTGGGTGGAGGACAATGGCAGATGGTGACGCGATTTCGA 801
Query 721 TCTTTGGATCGAGTCATGTATGGATTGATCATAACTCGTTGTCTCATTGCGCTGATGGGC 780
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 802 TCTTTGGATCGAGTCATGTATGGATTGATCATAACTCGTTGTCCCATTGCGCTGATGGGC 861
Query 781 TCGTGGACGCAATCATGGGCTCTACCGCGATTACCATCTCGAACAACCACTTAACTCACC 840
| ||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 862 TTGTGGACGCAGTCATGGGCTCAACCGCGATTACCATCTCTAACAACCACTTAACTCACC 921
Query 841 ACAACGAGGTTATGTTGCTCGGACATAGTGATTCGTACATCAGGGACAAAGCTATGCAAG 900
| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 922 ATAACGAGGTTATGTTGCTAGGACATAGTGACTCGTACATGAGGGACAAAGCTATGCAAG 981
Query 901 TTACCATTGCTTATAATCATTTTGGAGTGGGACTTATTCAAAGAATGCCTAGGTGTCGAC 960
| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 982 TGACCATTGCTTACAATCATTTTGGAGTCGGACTTATTCAAAGAATGCCGAGGTGTCGAC 1041
Query 961 ACGGGTACTTCCATGTCGTGAACAACGACTACACTCACTGGGAAATGTACGCGATAGGTG 1020
|||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 1042 ACGGGTACTTCCATGTTGTTAACAACGACTACACTCACTGGGAAATGTACGCAATAGGTG 1101
Query 1021 GTAGCGCAAACCCGACAATCAACAGTCAAGGAAACCGTTACGCCGCCCCGAAAAACCCCT 1080
||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 1102 GTAGCGCAAACCCGACAATCAACAGTCAAGGAAACCGCTATGCCGCCCCAAAAAACCCCT 1161
Query 1081 TTGCTAAAGAGGTGACGAAGAGAGTAGACACACCGGCAAGTCACTGGAAAGGATGGAATT 1140
||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 1162 TTGCTAAAGAGGTGACGAAGAGAGTGGACACACCGGCTAGTCATTGGAAAGGATGGAATT 1221
Query 1141 GGAGATCGGAAGGAGATTTGCTTCAGAACGGTGCTTACTTCACTTCTTCAGGAGCCGCTG 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1222 GGAGATCGGAAGGAGATTTGCTTCAGAACGGTGCTTACTTCACTTCTTCAGGAGCCGCCG 1281
Query 1201 CGTCCGGTAGCTACGCACGTGCCTCCAGCCTCTCCGCGAAATCTTCTTCATTGGTCGGAC 1260
|||| || ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1282 CGTCTGGCAGCTACGCACGTGCCTCCAGCCTTTCCGCGAAATCTTCGTCATTGGTCGGAC 1341
Query 1261 ACATTACTTCTGACGCCGGAGCTCTACCTTGTCGCAGAGGACGGCAATGTTCCTCATAGT 1320
|||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1342 ACATTACTTCCGACGCTGGAGCTCTACCTTGTCGCAGAGGACGTCAATGTTCCTCATAGT 1401
Query 1321 TACCACCCCACCACCAAAAT 1340
||| ||||||||||||||||
Sbjct 1402 TACTACCCCACCACCAAAAT 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65963516130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5