BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919161
Length=2862
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04730.1 | Symbols: CTF18 | P-loop containing nucleoside tri... 2902 0.0
> AT1G04730.1 | Symbols: CTF18 | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:1325296-1331086
REVERSE LENGTH=2921
Length=2921
Score = 2902 bits (1571), Expect = 0.0
Identities = 1865/1997 (93%), Gaps = 60/1997 (3%)
Strand=Plus/Plus
Query 21 ATGGAATTCGATATCCCATTGCCGGAAGAGCTTGAGCTTCTAGAAGCCAATTCTCATTTC 80
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAATTCGATATCCCATTGCCGGAGGAGCTTGAGCTTCTAGAAGCCAATTCTCATTTC 60
Query 81 TATGAAGAAGAAGAAGACGACTACCTAAACTTCGAGGAGCCGCCATATCCTTACCCAATT 140
|| ||||||||||| || | ||||||||||| ||||||||||||||||||||||||||
Sbjct 61 TACGAAGAAGAAGATGA-G--TACCTAAACTTTGAGGAGCCGCCATATCCTTACCCAATC 117
Query 141 GACGGCGATGAAGAAAAAGAAGAAGAACGCGTCGCGCAGAAGGAGCCTCATGTCCGACAA 200
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 118 GACGGCGATGAAGAAAAGGAAGAAGAACGCGTCGCGCACAAGGAGCCTCATGTCCGACAA 177
Query 201 TCGGAATCATCTGATATCAACGGTTGTAAACGACCCAGGAGTCTAATCTCCGATCCGATG 260
|||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 178 TCGGAATCTTCTGATATCAAGGGTTGTAAACGACCCAGGAGTCTAATTTCCGATCCGATT 237
Query 261 GTGAATCTCGACGAAGTCTCTCCAGCTTCTGATAAGAGAAGCAAAATTGATGCTAACCGG 320
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 238 GTGAATCTCGACGAAGTCTCTCCAGCTTCTGATAAGAGAAGCAAAATTGATGATAACCGG 297
Query 321 GTAGAAATTGAAGATGAGGATTGGTTACGCTTCTCGCCGGTTAAGGAAGTAGTTCACGTT 380
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 298 GTAGAAATTGAAGATGAGGATTGGTTACGCTTCTCTCCGGTTAAGGAAGTAGTTCACGTT 357
Query 381 AT---GGAGGAAGAAGAAGTTGTCATTCCCCAGGAGACTATTTTGTCCAGTAATCTCGTT 437
|| ||||||||||||||||||||||||||||||| | | | | | |
Sbjct 358 ATGGAGGAGGAAGAAGAAGTTGTCATTCCCCAGGAG---A-------C--T-A--T-G-- 399
Query 438 ATTGGAATTTGCAGATACGCTTCTGAGATAGATGGGGAATGCGTT-CCGATCACGGCACC 496
|| | | ||||||||||||||||||||||||||||||| || || ||||| |||||
Sbjct 400 -TT-G----TCCAGATACGCTTCTGAGATAGATGGGGAATGC-TTCCCAATCACAGCACC 452
Query 497 GGACGGAGGAGAGAGGGTTTATGCGAAATTCTGCCGGGCTTTAGGAGATGAAGAGGTGAA 556
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 453 TGACGGAGGAGATAGGGTTTATGCGAAATTCTGCCGGGCTTTGGGAGATGAAGAGGTGAA 512
Query 557 GAAATTGGATGTGAATGACAAGTCTCATGGGCTTATTAAAGATCCAATCAGTGTTCTTTT 616
|||||||||||||| ||||| ||| |||| |||||||||||||| ||||||||||||||
Sbjct 513 CAAATTGGATGTGAAAGACAAATCTAATGGTCTTATTAAAGATCCTATCAGTGTTCTTTT 572
Query 617 GCAGCAATCAGAGAAAGAGGCATTTAACAAGGTCTTGCAAGCTAGTTCTGAAGATCAGAA 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 GCAGCAATCAGAGAAAGAGGCATTTAACAAGGTCTTGCAAGCTAGTTCTGAAGATCAGAA 632
Query 677 TGAAACCATTTCTGCAGAAGCATCTGTAATGCATGAGAAACTCTGGGTAGACAAATATTC 736
||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 633 TGAAACCATTTCTGCAGAAACGTCTGTAATGCATGAGAAACTCTGGGTGGACAAATATTC 692
Query 737 TCCAAGCTCATTTACTGAGCTTCTTAGTGATGAGCAGACCAATCGAGAGGTCCTGTTATG 796
||| ||||| || ||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 693 TCCGAGCTCCTTCACTGAGCTTCTCAGTGATGAGCAAACCAATCGAGAGGTTCTGTTATG 752
Query 797 GCTTAAGCAGTGGGATGCTTCTGTTTTTGGATCTGAAATTAGGAGCACGACAGAGGAAGT 856
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 753 GCTTAAGCAGTGGGATGCTTCTGTTTTTGGATCTGAAATTAGGAGCACGACAGAGGCAGT 812
Query 857 ATTGTCAGCTTTGAAACGACATTCTACCTCAAGTCATCATCAAAAATCGGATTCAGCTTT 916
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 813 ATTGTCAGCTTTGAAACGACATTCTACCACAAGTCATCATCAGAAATCGGATTCAGCTTT 872
Query 917 TACAAGGAAAAAGCAGTTCAATAGATGGAGTAAGGAGAGTTTTAGATATCCTAAAAATGC 976
|||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 873 TACAAGGAAAAAACAGTTCAATAGATGGAGTAAGGAGAGTTTTGGATATTCTAAAAATGC 932
Query 977 AGACGTGAGCAATACCAACACTGCAGATAATAATGACTTGTGGAACAAAAAGTCAAAACT 1036
||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 933 AGAAGTGAGCAATACCAACACTGCAGATATTAATGACTTGTGGAACAAAAAGTCCAAACT 992
Query 1037 TACTGGTCCTCCTGAGCAAAAGATCCTTCTGCTTTGTGGTGCCCCTGGACTTGGAAAGAC 1096
||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 993 TACTGGTCCTCCTGAACAAAAGATCCTTCTGCTCTGTGGTGCCCCCGGACTTGGAAAGAC 1052
Query 1097 AACGCTTGCTCACATTGCAGCTAAGCATTGTGGATATCGTGTTGTTGAGATCAATGCTAG 1156
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1053 AACGCTTGCTCACATTGCAGCTAAGCATTGTGGATATCGCGTTGTTGAGATCAATGCTAG 1112
Query 1157 CGACGAGCGATCAGCATCAGCCATTGAAACTAGAATTCTTGACGTAGTTCAGATGAACTC 1216
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1113 TGACGAGCGATCAGCATCAGCTATTGAAACTAGAATTCTTGATGTAGTTCAGATGAACTC 1172
Query 1217 GGTTACAGCTGATTCTAGACCTAAATGTTTGGTGATTGATGAGATAGATGGAGCTCTTGG 1276
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 TGTCACAGCTGATTCTAGACCTAAATGTTTGGTGATTGATGAGATAGATGGAGCTCTTGG 1232
Query 1277 TGATGGAAAAGGAGCAGTTGATGTTATTCTAAAGATGGTGTTGGCAGAAAGAAAGCATGC 1336
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1233 TGATGGAAAAGGAGCAGTTGATGTTATTCTTAAGATGGTGTTGGCAGAAAGAAAACATGC 1292
Query 1337 TACTGGCAAGGAAAATATAGAGAATGTAAAGACTTCCTCGAAGAAGGAGCGCCGAACAGC 1396
||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1293 TACAGGCAAGGAAAATGTAGAGAATGTAAAGACTTCCTCGAAGAAGGACCGCCGAACAGC 1352
Query 1397 ACCACTATCAAGACCTGTGATTTGTATATGTAATGATTTATATGCACCAGCACTTAGGCC 1456
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 1353 ACCACTATCAAGACCTGTCATTTGTATATGTAATGATTTATATGCACCAGCACTAAGACC 1412
Query 1457 TCTGCGACAGATAG----G-TTCATATATTTGTTCAACCAACGGTGAGTCGTGTGGTAAA 1511
|||||||||||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct 1413 TCTGCGACAGATAGCAAAGGTTCATATATTTGTTCAACCAACAGTGAGTCGTGTGGTAAA 1472
Query 1512 CAGGCTGAGATGTGTGCAAATGACAGGCTCAAGTATATCTGTTATATGGAGGGGATGAAA 1571
|||||| | | || || | | | ||| || || |||||| ||||||
Sbjct 1473 CAGGCTCA-A-GTA--CA--T--C----T---GTA-AT-----AT--GGAGGGTATGAAA 1509
Query 1572 GCAAGATCATTCGCTCTTAGTGCTCTTGCGGAGTACACTGAATGTGACATTCGCTCTTGC 1631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 GCAAGATCATTCGCTCTTAGTGCTCTTGCGGAGTACACTGAATGTGACATTCGCTCTTGC 1569
Query 1632 TTGAACACACTGCAATTTCTCTACAAGAAGAAAGAAACCATCAATGTGATTGACATTGGA 1691
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 TTGAACACTCTGCAATTTCTCTACAAGAAGAAAGAAACCATCAATGTGATTGACATTGGA 1629
Query 1692 TCTCAAGTTGTTGGGCGGAAAGACATGTCAAAGAGTCTGTTTGATATCTGGAAAGAGATA 1751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1630 TCTCAAGTTGTTGGGCGGAAAGACATGTCAAAGAGTCTGTTTGATATCTGGAAAGAGATA 1689
Query 1752 TTCACCACGAGAAAAATGAAACGAGAACGATCTAATGACGCTTCTGGCAGTGGGGCCAAA 1811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1690 TTCACCACGAGAAAAATGAAACGAGAACGATCTAATGACGCTTCTGGCAGTGGGGCCAAA 1749
Query 1812 AACTTTGACTTCTTACACACTCTCGTATCCAGTCGGGGTGATTATGATTTGATTTTTGAT 1871
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1750 AACTTTGACTTCTTACACTCTCTCGTGTCCAGTCGGGGTGATTATGATTTGATTTTCGAT 1809
Query 1872 GGTATACATGAAAACATTTTGCAGCTCCACTACCATGATCCAGTGATGGACAAGACAATT 1931
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1810 GGTATACATGAAAACATTTTGCAGCTCCACTACCATGATCCAGTGATGGACAAGACAATC 1869
Query 1932 AGCTGCTTGGACTGTCTTGGAACTTCTGATTTGCTGCATCGATACATATTGCGCACCCAG 1991
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1870 AGCTGCTTGGACGGTCTTGGAACTTCTGATTTGCTGCATCGATACATAATGCGCACTCAG 1929
Query 1992 CAAATGCCTCTCTATGT 2008
|||||||||||||||||
Sbjct 1930 CAAATGCCTCTCTATGT 1946
Score = 1258 bits (681), Expect = 0.0
Identities = 783/830 (94%), Gaps = 15/830 (2%)
Strand=Plus/Plus
Query 2030 CAGATGTCGAACACTTTTGGTAGAAAAGCAGGAGTCTCTGCGGTCTTGGCACCACAAGAT 2089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 CAGATGTCGAACACTTTTGGTAGAAAAGCAGGAGTCTCTGCGGTCTTGGCACCACAAGAT 2090
Query 2090 ACCTCCCTATATTGGGAGGCATTTGTCAATCAAGTCTTTCGTAGAAGACTCTATTTCCCC 2149
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 ACCTCCCTATATTGGAAGGCATTTGTCAATCAAGTCTTTCGTAGAAGACTCTATTTCCCC 2150
Query 2150 GCTATTGCATATTCTTTCTCCCCCAACTCTTAGACCGGTGGCATCGCATTTGCTATCAGA 2209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2151 GCTATTGCATATTCTTTCTCCCCCAACTCTTAGACCGGTGGCATCGCATTTGCTATCAGA 2210
Query 2210 TAGGCAAAAGGATCAACTGGCGGGTTTGGTCATGCTTATGTGTTCTTATTCTTTGACTTA 2269
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2211 TAGGCAAAAGGAACAACTGGCGGGTTTGGTCATGCTTATGTGTTCTTATTCTTTGACTTA 2270
Query 2270 TAAGAATGTGAAATCTGATCCTGGTCTGAGTAACCTCAGGGATGATGCTGCTTCAGATGC 2329
||||||||||||||||||||||| ||| |||| ||||||||| |||||||||||||||||
Sbjct 2271 TAAGAATGTGAAATCTGATCCTGTTCTAAGTAGCCTCAGGGAGGATGCTGCTTCAGATGC 2330
Query 2330 TTTAGTTCTTGCTTTAGATCCACATCTATTTGATTTCATTAATTTCAAGGGTCACCAATT 2389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2331 TTTAGTTCTTGCTTTAGATCCACATCTATTTGATTTCATTAATTTCAAGGGTCACCAATT 2390
Query 2390 TAAACATCACGTACTCGCCTTAGCAATGAAACAAGTGTTGGTACATGAACT-GCATGGAG 2448
||||||||| |||||||||||||| |||||||||||||||||||||||| | | | | ||
Sbjct 2391 TAAACATCATGTACTCGCCTTAGCGATGAAACAAGTGTTGGTACATGAAGTTG-A-GAAG 2448
Query 2449 ATCTTGATTGTATGATACTGCAAGCAAGTGGAGGAAGGTCCGGGATCCTGAACAAACCCG 2508
| | | ||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 2449 --CAA-A----A-GATACTGCAAGCAAGTGGAGGAAAGTCCGGGATCTTGAACAAACCCG 2500
Query 2509 AAATCAAGAAAATAAATCAAGACCTAGC-AAGGAAAAGAAATGCTGCAGCAAATGAAAGT 2567
|||| |||||||||||||||||| |||| ||| |||| |||||||||||||||||||||
Sbjct 2501 AAATTAAGAAAATAAATCAAGACTTAGCGAAG-AAAACCAATGCTGCAGCAAATGAAAGT 2559
Query 2568 CAAAGAAATCCAATCT-CCTCTAAACCTCCGTCAGTCTCAGTTGGGATTGCCACAACTTC 2626
||||||| ||| | | |||||||||||||||| || |||||||||| ||| ||||| ||
Sbjct 2560 CAAAGAACCCCAGT-TACCTCTAAACCTCCGTCGGTTTCAGTTGGGACTGCGACAACATC 2618
Query 2627 AAAACCTAATTCTAGTGATGTGAAAAAGGCATCTCGCACCGCCCTTAATTTCTTCGACAG 2686
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2619 AAAACCTAATTCTAGTGATGTGAAAAAGGCATCTCGCAACGCCCTTAATTTCTTCGACAG 2678
Query 2687 GTTTAGGAAGTCAAGGAAAGATTATGAAGATCCAGAGGATGTACAAAAGCGAGCAACTGC 2746
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2679 GTTTAGGAAGTCAAGGAAAGATTATGAAGATCCAGAGGATGTACAAAATCGAGCAACTGC 2738
Query 2747 AAAAAGAGATTCAAGACCTCTTCTCTTCAAGTTTAACGAGGGTTTCACAAATGCTGTGAA 2806
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 AAAAAGAGATTCACGTCCTCTTCTCTTCAAGTTTAACGAGGGTTTCACAAATGCTGTGAA 2798
Query 2807 GAGACCAGTTAGAATGCGGGAGTTTCTACTATGATTCTGCAATGAAGTCA 2856
|||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2799 GAGACCCGTTAGAATGCGGGAGTTTCTACTATGATTCTGCAACGAAGTCA 2848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 142223283405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5