BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919162
Length=700
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04750.1 | Symbols: VAMP7B, VAMP721, ATVAMP721, AT VAMP7B | ... 1225 0.0
AT2G33120.2 | Symbols: SAR1, VAMP722, ATVAMP722 | synaptobrevin... 737 0.0
AT2G33110.1 | Symbols: ATVAMP723, VAMP723 | vesicle-associated ... 571 3e-162
> AT1G04750.1 | Symbols: VAMP7B, VAMP721, ATVAMP721, AT VAMP7B
| vesicle-associated membrane protein 721 | chr1:1331466-1333567
REVERSE LENGTH=1192
Length=1192
Score = 1225 bits (663), Expect = 0.0
Identities = 688/700 (98%), Gaps = 1/700 (0%)
Strand=Plus/Plus
Query 1 GAGATTT-AGGTAAAGAGAAAATGGCGCAACAATCGTTGATCTACAGTTTCGTCGCTCGC 59
||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 GAGATTTAAGGTAAAGAAAAAATGGCGCAACAATCGTTGATCTACAGTTTCGTAGCTCGC 180
Query 60 GGCACGGTGATCCTCGTTGAGTTCACTGATTTCAAAGGTAATTTCACCTCAATCGCTGCT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGCACGGTGATCCTCGTTGAGTTCACTGATTTCAAAGGTAATTTCACCTCAATCGCTGCT 240
Query 120 CAGTGCCTCCAGAAGCTTCCGTCTTCCAACAACAAGTTCACCTACAACTGCGACGGTCAT 179
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 CAGTGCCTCCAGAAGCTTCCGTCTTCGAACAACAAGTTCACCTACAACTGCGACGGTCAT 300
Query 180 ACCTTCAACTACCTTGTCGAAGATGGATTCACCTATTGTGTTGTTGCGGTTGATTCTGCT 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACCTTCAATTACCTTGTCGAAGATGGATTCACCTATTGTGTTGTTGCGGTTGATTCTGCT 360
Query 240 GGGAGGCAAATTCCGATGGCCTTTTTGGAAAGAGTAAAAGAGGATTTTAACAAGAGATAT 299
|||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct 361 GGGAGGCAAATTCCCATGTCCTTTTTGGAAAGAGTAAAAGAAGATTTTAACAAGCGATAT 420
Query 300 GGTGGTGGAAAAGCTGCAACTGCTCAAGCAAACAGCTTGAATAAGGAGTTTGGCTCTAAA 359
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGTGGTGGAAAGGCTGCAACTGCTCAAGCAAACAGCTTGAATAAGGAGTTTGGCTCTAAA 480
Query 360 CTGAAAGAGCATATGCAGTATTGCATGGATCATCCAGATGAGATTAGCAAGCTTGCTAAG 419
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 CTGAAAGAGCATATGCAGTATTGCATGGATCATCCTGATGAGATTAGCAAGCTTGCTAAG 540
Query 420 GTGAAGGCGCAAGTGTCAGAAGTTAAGGGTGTAATGATGGAAAACATTGAGAAGGTTCTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTGAAGGCGCAAGTGTCAGAAGTTAAGGGTGTAATGATGGAAAACATTGAGAAGGTTCTT 600
Query 480 GACCGTGGTGAAAAAATTGAGCTTTTGGTGGACAAAACCGAAAATCTTCGCTCACAGGCA 539
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GACCGTGGTGAGAAAATTGAGCTTTTGGTGGACAAAACCGAAAATCTTCGCTCACAGGCA 660
Query 540 CAAGATTTCAGAACAACAGGAACGCAGATGAGAAGAAAGATGTGGCTTCAGAACATGAAG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CAAGATTTCAGAACAACAGGAACGCAGATGAGAAGAAAGATGTGGCTTCAGAACATGAAG 720
Query 600 ATAAAACTCATAGTGCTCGCCATCATTATCGCACTGATTCTCATCATCGTGCTCTCAGTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATAAAACTCATAGTGCTCGCCATCATTATCGCACTGATTCTCATCATCGTGCTCTCAGTT 780
Query 660 TGCCATGGGTTTAAGTGTTAAGCCCAGAAAATTCAAAACT 699
||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGCCATGGGTTTAAGTGTTAAGCCCAGAAAATTCAAAACT 820
> AT2G33120.2 | Symbols: SAR1, VAMP722, ATVAMP722 | synaptobrevin-related
protein 1 | chr2:14043459-14045543 REVERSE LENGTH=1222
Length=1222
Score = 737 bits (399), Expect = 0.0
Identities = 591/679 (87%), Gaps = 32/679 (5%)
Strand=Plus/Plus
Query 10 GTAAAGAGAAAATGGCGCAACAATCGTTGATCTACAGTTTCGTCGCTCGCGGCACGGTGA 69
||||| | ||||||||||||||||||||||||||||||||||||||||| || || || |
Sbjct 198 GTAAA-A-AAAATGGCGCAACAATCGTTGATCTACAGTTTCGTCGCTCGTGGTACCGTTA 255
Query 70 TCCTCGTTGAGTTCACTGATTTCAAAGGTAATTTCACCTCAATCGCTGCTCAGTGCCTCC 129
|||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 256 TCCTCGTTGAGTTCACAGATTTCAAAGGCAATTTCACATCAATCGCTGCTCAGTGCCTTC 315
Query 130 AGAAGCTTCCGTCTTCCAACAACAAGTTCACCTACAACTGCGACGGTCATACCTTCAACT 189
|||||||||| ||||| ||||||||||| |||||||||||||| ||||| || ||||| |
Sbjct 316 AGAAGCTTCCTTCTTCTAACAACAAGTTTACCTACAACTGCGATGGTCACACGTTCAATT 375
Query 190 ACCTTGTCG--AA--G----A-TG-G-------A-T--TC-A---CCTATTGTGTTGTTG 225
|||| |||| || | | || | | | || | |||||||||||||||
Sbjct 376 ACCTCGTCGAAAATGGATTCAGTGAGTCAAAATATTGCTCGATCTCCTATTGTGTTGTTG 435
Query 226 CGGTTGATTCTGCTGGGAGGCAAATTCCGATGGCCTTT-TTGGAAAGAGTAAAAGAGGAT 284
| |||||||||||||||||||| ||||| |||| |||| |||||| |||| || ||||||
Sbjct 436 CAGTTGATTCTGCTGGGAGGCAGATTCCTATGG-CTTTCTTGGAACGAGTTAAGGAGGAT 494
Query 285 TTTAACAAGAGATATGGTGGTGGAAAAGCTGCAACTGCTCAAGCAAACAGCTTGAATAAG 344
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 495 TTCAACAAGAGATATGGTGGTGGAAAGGCTGCAACTGCTCAAGCAAACAGCTTGAATAAA 554
Query 345 GAGTTTGGCTCTAAACTGAAAGAGCATATGCAGTATTGCATGGATCATCCAGATGAGATT 404
|| ||||| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 555 GAATTTGGGTCGAAACTGAAAGAGCATATGCAGTATTGCATGGATCATCCTGATGAGATT 614
Query 405 AGCAAGCTTGCTAAGGTGAAGGCGCAAGTGTCAGAAGTTAAGGGTGTAATGATGGAAAAC 464
||||||||||||||||| || || |||||||| |||||||| ||||| ||||||||||||
Sbjct 615 AGCAAGCTTGCTAAGGTTAAAGCTCAAGTGTCTGAAGTTAAAGGTGTTATGATGGAAAAC 674
Query 465 ATTGAGAAGGTTCTTGACCGTGGTGAAAAAATTGAGCTTTTGGTGGACAAAACCGAAAAT 524
|||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||
Sbjct 675 ATTGAGAAGGTTCTTGACCGTGGTGAGAAGATTGAGCTTTTGGTTGACAAAACAGAAAAC 734
Query 525 CTTCGCTCACAGGCACAAGATTTCAGAACAACA-GGAACGCAGATGAGAAGAAAGATGTG 583
|||||||||||||| |||||||| |||||| || ||||| || |||||||||||||||||
Sbjct 735 CTTCGCTCACAGGCGCAAGATTTTAGAACA-CAAGGAACTCAAATGAGAAGAAAGATGTG 793
Query 584 GCTTCAGAACATGAAGATAAAACTCATAGTGCTCGCCATCATTATCGCACT-GATTCTCA 642
| ||||||||||||||||||| ||||| || || || || || || || || ||||||||
Sbjct 794 GTTTCAGAACATGAAGATAAAGCTCATTGTCCTTGCAATTATCATTGC-CTTGATTCTCA 852
Query 643 TCATCGTGCTCTCAGTTTG 661
||||| | |||||| ||||
Sbjct 853 TCATCATCCTCTCAATTTG 871
> AT2G33110.1 | Symbols: ATVAMP723, VAMP723 | vesicle-associated
membrane protein 723 | chr2:14041038-14043358 REVERSE LENGTH=1379
Length=1379
Score = 571 bits (309), Expect = 3e-162
Identities = 540/649 (83%), Gaps = 26/649 (4%)
Strand=Plus/Plus
Query 20 AATGGCGCAACAATCGTTGATCTACAGTTTCGTCGCTCGCGGCACGGTGATCCTCGTTGA 79
||||||||||||||||||| ||||||||||| ||||||||||||| || |||||||| ||
Sbjct 466 AATGGCGCAACAATCGTTGTTCTACAGTTTCATCGCTCGCGGCACCGTAATCCTCGTCGA 525
Query 80 GTTCACTGATTTCAAAGGTAATTTCACCTCAATCGCTGCTCAGTGCCTCCAGAAGCTTCC 139
|||||| ||||||||||| |||||||| || |||||||||||| ||| |||| |||||
Sbjct 526 GTTCACAGATTTCAAAGGCAATTTCACATCTGTCGCTGCTCAGTACCTTGAGAATCTTCC 585
Query 140 GTCTTCCAACAACAAGTTCACCTACAACTGCGACGGTCATACCTTCAACTACCTTGTCGA 199
|| || ||||||||||| |||||||||||||| |||||||| |||||| |||| |||||
Sbjct 586 TTCCTCGAACAACAAGTTTACCTACAACTGCGATGGTCATACGTTCAACGACCTCGTCGA 645
Query 200 AGATGGATTCACCTATTGTGTTGTTGCGGTTGATTCTGCTGGGAGGCAAATTCCGATGGC 259
| ||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||
Sbjct 646 AAATGGATTCACCTATTGTGTTGTTGCAGTTGATTCTGCTGGGAGGGAGATTCCTATGG- 704
Query 260 CTTT-TTGGAAAGAGTAAAAGAGGATTTTAACAAGAGATATGGTGGTGGAAAA-GCTGCA 317
|||| |||||| | || || ||||||||| | ||||||||||||||| ||||| ||||||
Sbjct 705 CTTTCTTGGAACGCGTGAAGGAGGATTTTTATAAGAGATATGGTGGT-GAAAAGGCTGCA 763
Query 318 ACTGCTCAAGCAAACAGCTTGAATAAGGAGTTTGGCTCTAAACTGAAAGAGCATATGCAG 377
|||| ||||||||| ||||||||||| || ||||| || || ||||||||||| ||||||
Sbjct 764 ACTGATCAAGCAAATAGCTTGAATAAAGAATTTGGGTCGAATCTGAAAGAGCACATGCAG 823
Query 378 TATTGCATGGATCATCCAGATGAGATTAGCAAGCTTGCT-AAGGTGAAGGCGCAAGTGTC 436
||||||||||||||||| |||||||||||||| |||||| ||| | || || ||||||||
Sbjct 824 TATTGCATGGATCATCCTGATGAGATTAGCAACCTTGCTAAAGCT-AAAGCTCAAGTGTC 882
Query 437 AGAAGTTAAGGGTGTAATGATGGAAAACATTGAGAAGGTTCTTGACCGTGGTGAAAAAAT 496
|||||||| || |||||||||||||||||||||||||||||| |||||||| | | |
Sbjct 883 TGAAGTTAAAAGTTTAATGATGGAAAACATTGAGAAGGTTCTTGCCCGTGGTGTGATA-T 941
Query 497 -TGAGCTTTTGGTGGACAAAACCGAAAATCTTCGCTCACAGGCACAAGATTTC-AGA-AC 553
|||| | ||| | | | || | |||||| | |||| |||| | | |
Sbjct 942 GTGAGATGCTGG-GTAGTTCA--GA--------G-TCACAGCCGCAAGCTTTCTATATAA 989
Query 554 AACAGGAACGCAGATGAGAAGAAAGATGTGGCTTCAGAACATGAAGATAAAACTCATAGT 613
|| || ||| || |||| ||| |||| |||| ||||||||||||||||||||||||| ||
Sbjct 990 AA-AG-AACTCAAATGAAAAGGAAGAAGTGGTTTCAGAACATGAAGATAAAACTCATTGT 1047
Query 614 GCTCGCCATCATTATCGCACT-GATTCTCATCATCGTGCTCTCAGTTTG 661
|| || || || || || || ||||||||||||| | ||||| |||||
Sbjct 1048 CCTTGCAATTATCATTGC-CTTGATTCTCATCATCATCCTCTCGGTTTG 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33908049225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5