BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919163
Length=703
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04760.1 | Symbols: ATVAMP726, VAMP726 | vesicle-associated ... 1142 0.0
AT2G32670.1 | Symbols: ATVAMP725, VAMP725 | vesicle-associated ... 809 0.0
> AT1G04760.1 | Symbols: ATVAMP726, VAMP726 | vesicle-associated
membrane protein 726 | chr1:1334760-1336070 FORWARD LENGTH=663
Length=663
Score = 1142 bits (618), Expect = 0.0
Identities = 648/663 (98%), Gaps = 0/663 (0%)
Strand=Plus/Plus
Query 21 ATGGGACAACAATCGTTGATCTACAGCTTCGTCGCTCGCGGTACGGTGATCCTCGCCGAG 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGACAACAATCGTTGATCTACAGCTTCGTCGCTCGCGGTACGGTGATCCTCGCCGAG 60
Query 81 TATACCGAATTCAAGGGCAATTTTACGTCCGTCGCTGCTCAGTGCCTCCAGAAACTTCCG 140
|||||||| |||||||||||||| || |||||||| |||||||| |||||||||||||||
Sbjct 61 TATACCGAGTTCAAGGGCAATTTCACCTCCGTCGCCGCTCAGTGTCTCCAGAAACTTCCG 120
Query 141 TCATCGAACAACAAGTTTACCTACAATTGCGACGGTCACACTTTCAATTATCTCGCTGAT 200
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCTCGAACAACAAATTTACCTACAATTGCGACGGTCACACTTTCAATTATCTCGCTGAT 180
Query 201 AATGGCTTCACCTATTGTGTTGTTGTTGTTGAATCTGCTGGGAGGCAGATACCAATGGCT 260
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 AATGGCTTCACCTATTGTGTTGTTGTTATTGAATCTGCTGGGAGGCAGATACCAATGGCT 240
Query 261 TTCTTGGAGAGAGTCAAGGAGGATTTCAGCAAGAGATACGGTGGTGGAAAGGCTTCCACT 320
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 241 TTCTTGGAGAGAGTCAAGGAGGATTTCAACAAGAGATACGGTGGTGGAAAAGCTTCCACT 300
Query 321 GCTAAAGCCAACAGCTTAAACAAAGAATTCGGGTCTAAATTGAAGGAGCACATGCAGTAC 380
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTAAAGCCAACAGCTTGAACAAAGAATTCGGGTCTAAATTGAAGGAGCACATGCAGTAC 360
Query 381 TGTGCGGATCATCCTGAGGAGATTAGCAAACTTTCCAAGGTTAAGGCTCAGGTGACTGAA 440
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 TGTGCGGATCATCCTGAGGAGATTAGCAAACTTTCCAAAGTTAAGGCTCAGGTGACTGAA 420
Query 441 GTGAAGGGTGTTATGATGGAGAATATTGAGAAGGTCCTTGACCGTGGTGAGAAAATCGAG 500
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 GTGAAGGGTGTTATGATGGAGAATATTGAGAAGGTCCTTGACCGTGGAGAGAAAATCGAG 480
Query 501 CTATTAGTAGACAAAACTGAGAACCTTCGCTCACAGGCACAAGATTTTAGAACACAAGGA 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTATTAGTAGACAAAACTGAGAACCTTCGCTCACAGGCACAAGATTTTAGAACACAAGGA 540
Query 561 ACAAAGATGAAAAGAAAGTTGTGGTTTGAAAACATGAAGATAAAGCTCATAGTCTTTGGC 620
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 ACAAAGATGAAAAGAAAGTTGTGGTTCGAAAACATGAAGATAAAGCTCATAGTCTTTGGC 600
Query 621 ATCATCGTCGCTTTGATTCTCATCATCATTTTGTCGGTTTGCCATGGCTTCAAGTGTACT 680
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCATTGTCGCTTTGATTCTCATCATCATTTTGTCGGTTTGCCATGGCTTCAAGTGTACT 660
Query 681 TAA 683
|||
Sbjct 661 TAA 663
> AT2G32670.1 | Symbols: ATVAMP725, VAMP725 | vesicle-associated
membrane protein 725 | chr2:13857877-13859774 FORWARD LENGTH=1350
Length=1350
Score = 809 bits (438), Expect = 0.0
Identities = 599/677 (88%), Gaps = 10/677 (1%)
Strand=Plus/Plus
Query 16 GAAGAATGGGACAACAATCGTTGATCTACAGCTTCGTCGCTCGCGGTACGGTGATCCTCG 75
||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 255 GAACAATGGGACAACAAAATTTGATCTACAGCTTCGTCGCTCGTGGTACGGTGATTCTCG 314
Query 76 CCGAGTATACCGAATTCAAGGGCAATTTTACGT-CCGTCGCTGCTCAGTGCCTCCAGAAA 134
||||||||| |||||||| || ||||| || | |||||||||| ||||| ||||| |||
Sbjct 315 TCGAGTATACAGAATTCAAAGGAAATTTCAC-TGCCGTCGCTGCACAGTGTCTCCA-AAA 372
Query 135 -CTTCCGTCATCGAACAACAAGTTTACCTACAATTGCGACGGTCACACTTTCAATTATCT 193
||||| || ||||| ||||||||||| |||||||||||||| ||||| |||||||| ||
Sbjct 373 GCTTCCTTCTTCGAATAACAAGTTTACATACAATTGCGACGGACACACGTTCAATTACCT 432
Query 194 CGCT-GATAATGGCTTCACCTATTGTGTTGTTGTTGTTGAATCTGCTGGGAGGCAGATAC 252
|| | || ||||||||||| ||||||||||||| ||||||||||| |||||||||||| |
Sbjct 433 CG-TCGAGAATGGCTTCACGTATTGTGTTGTTGCTGTTGAATCTGTTGGGAGGCAGATTC 491
Query 253 CAATGGCTTTCTTGGAGAGAGTCAAGGAGGATTTCAGCAAGAGATACGGTGGTGGAAAGG 312
| |||||||||||||||||||| ||||| ||||||| ||||||||| |||||||| ||||
Sbjct 492 CTATGGCTTTCTTGGAGAGAGTTAAGGAAGATTTCAACAAGAGATATGGTGGTGGTAAGG 551
Query 313 CTTCCACTGCTAAAGCCAACAGCTTAAACAAAGAATTCGGGTCTAAATTGAAGGAGCACA 372
|| |||||||| |||||||||||||||||| ||| || ||||| ||| ||||||||||||
Sbjct 552 CTACCACTGCTCAAGCCAACAGCTTAAACAGAGAGTTTGGGTCGAAACTGAAGGAGCACA 611
Query 373 TGCAGTACTGTGCGGATCATCCTGAGGAGATTAGCAAACTTTCCAAGGTTAAGGCTCAGG 432
|||||||||||| |||||||||||| ||||||||||||||| |||| |||||||||||||
Sbjct 612 TGCAGTACTGTGTGGATCATCCTGACGAGATTAGCAAACTTGCCAAAGTTAAGGCTCAGG 671
Query 433 TGACTGAAGTGAAGGGTGTTATGATGGAGAATATTGAGAAGGTCCTTGACCGTGGTGAGA 492
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 672 TTACTGAGGTGAAGGGTGTTATGATGGAGAACATTGAGAAGGTCCTTGACCGTGGTGAGA 731
Query 493 AAATCGAGCTAT-TAGTAGACAAAACTGAGAACCTTCGCTCACAGGCACAAGATTTTAGA 551
|||| ||||| | |||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 732 AAATTGAGCT-TCTAGTTGACAAAACTGAGAACCTTCGTTCACAGGCACAAGATTTCAGA 790
Query 552 ACACAAGGAACAAAGATGAA-AAGAAAGTTGTGGTTTGAAAACATGAAGATAAAGCTCAT 610
|||||||||||||| || || ||||||| |||||||||||||||||||||| ||||||||
Sbjct 791 ACACAAGGAACAAAAAT-AAGAAGAAAGATGTGGTTTGAAAACATGAAGATTAAGCTCAT 849
Query 611 AGTCTTTGGCATCATCGTCGCTTTGATTCTCATCATCATTTTGTCGGTTTGCCATGGCTT 670
|||| | || |||||| | | ||||||||||||||||| | || |||||| || ||
Sbjct 850 AGTCCTCGGTATCATCATTACCTTGATTCTCATCATCATCCTCTCTGTTTGCGGGGGATT 909
Query 671 CAAGTGTACTTAAAACT 687
||||||||| |||||||
Sbjct 910 CAAGTGTACCTAAAACT 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34058751666
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5