BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919164
Length=958
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04770.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1519 0.0
AT5G22794.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 254 1e-66
AT1G49940.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 239 4e-62
> AT1G04770.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:1336371-1337849 REVERSE LENGTH=1187
Length=1187
Score = 1519 bits (822), Expect = 0.0
Identities = 917/961 (95%), Gaps = 14/961 (1%)
Strand=Plus/Plus
Query 2 CAGAGATACAG-AGTTTGC---GATGATGATGATTCAGAGGAGAGGAGGAGATGAGAGAC 57
|||||| || | ||||||| ||||||||||||||||| || | |||||| ||||||||
Sbjct 64 CAGAGACAC-GAAGTTTGCGATGATGATGATGATTCAGA-GA-A-GAGGAGGTGAGAGAC 119
Query 58 AAGACTCGGCGGCGGCGACGTACAACGTTGTCCATAAGTTGCCTCACGGAGACAGTCCTT 117
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AAGACTCGTCGGCGGCGGCGTACAACGTTGTCCATAAGTTGCCTCACGGAGACAGTCCTT 179
Query 118 ATGTCCGAGCGAAGCATGTTCAGTTGGTGGAGAAAGATGCAGAAGCAGCGATAGAGTTGT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATGTCCGAGCGAAGCATGTTCAGTTGGTGGAGAAAGATGCAGAAGCAGCGATAGAGTTGT 239
Query 178 TTTGGAGAGCGATTGAAGCGAGAGATAGAGTGGATAGTGCTCTTAAAGACATGGCCTTGT 237
|||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 240 TTTGGATAGCGATTAAAGCGAGAGATAGAGTTGATAGTGCTCTTAAAGACATGGCCTTGT 299
Query 238 TGATGAAACAACAGAACAGAGCTGAAGAAGCCATTGACGCTATTCAATCCTTTCGAGATC 297
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 TAATGAAACAACAGAACAGAGCTGAAGAAGCCATTGACGCTATTCAATCCTTTAGAGATC 359
Query 298 TTTGTTCCAGACAAGCTCAAGAATCATTAGACAATGTCCTCATCGATCTCTATAAGAAAT 357
||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 360 TTTGTTCAAGACAAGCTCAAGAGTCATTAGACAATGTCCTCATCGATCTATATAAGAAAT 419
Query 358 GTGGGAGAATAGAAGAGCAAGTTGAGTTACTGAAGCAAAAGCTTTGGATGATATATCAAG 417
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 GTGGGAGAATAGAAGAGCAAGTTGAGTTATTGAAGCAAAAGCTTTGGATGATATATCAAG 479
Query 418 GAGAAGCATTCAATGGCAAACCAACAAAGACTGCGAGGTCTCATGGCAAGAAGTTTCAGG 477
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 GAGAAGCATTCAATGGCAAACCAACAAAGACTGCGAGATCTCATGGCAAGAAGTTTCAGG 539
Query 478 TCACGGTCGAGAAGGAAACCTCTAGGATCTTGGGGAACTTGGGATGGGCTTATATGCAGC 537
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 540 TCACCGTCGAGAAGGAAACCTCTAGGATCTTGGGGAACTTGGGATGGGCTTATATGCAAC 599
Query 538 TAATGGACTATACAGCAGCCGAAGCTGTGTACCGGAAAGCTCAGTTGATAGAGCCAGATG 597
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 600 TAATGGACTATACAGCAGCTGAAGCTGTGTATCGGAAAGCTCAATTGATAGAGCCAGATG 659
Query 598 CAAACAAGGCTTGTAATTTGTGCACATGTCTCATCAAGCAAGGGAAGCAGGATGAGGCGA 657
||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 660 CAAACAAGGCTTGCAATTTATGCACATGTCTCATCAAGCAAGGGAAGCACGATGAGGCGA 719
Query 658 GGTCGATTCTCTTTCGTGATGTACTAATGGATAACAAAGAAGGGTCTGGTGATCCGAAGT 717
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 720 GGTCGATTCTCTTTCGTGATGTACTAATGGAGAACAAAGAAGGGTCTGGTGATCCGAGGT 779
Query 718 TGATGGTTCGGGTTCAAGAGCTATTGAGTGAGCTAAAGCCACAGGAAGAAGAAGCAGCGG 777
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGATGGCTCGGGTTCAAGAGCTATTGAGTGAGCTAAAGCCACAGGAAGAAGAAGCAGCGG 839
Query 778 CTTTAGCTTCTATGTCTGTTGAATGTGAAGTTGGTATGGATGAGATAGCAGTTGTCGAAG 837
||| || | |||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 840 CTT---CTG-T--GTCTGTGGAATGTGAAGTTGGTATAGATGAGATAGCGGTTGTCGAAG 893
Query 838 GACTTGATGAGTTTGTGAAGGAATGGAGGAGGCCTTATAGGACAAGAAGACTTCCAATTT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 894 GACTTGATGAGTTTGTGAAGGAATGGAGGAGGCCTTATAGGACAAGAAGACTTCCGATTT 953
Query 898 TCGAAGAGATCTTACCACTGAGAGATCAATTGGCTTGTTGATGATTCTCTGTGTGTTTGG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TCGAAGAGATCTTACCACTGAGAGATCAATTGGCTTGTTGATGATTCTCTGTGTGTTTGG 1013
Query 958 A 958
|
Sbjct 1014 A 1014
> AT5G22794.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana protein
match is: Tetratricopeptide repeat (TPR)-like superfamily
protein (TAIR:AT1G04770.1); Has 146 Blast hits to 146 proteins
in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 146; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr5:7608242-7611591 FORWARD LENGTH=714
Length=714
Score = 254 bits (137), Expect = 1e-66
Identities = 183/205 (89%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 307 GACAAGCTCAAGAATCATTAGACAATGTCCTCATCGATCTCTATAAGAAATGTGGGAGAA 366
|||||||||||||||||||||| ||||| ||||||||||| ||||||||| |||| ||||
Sbjct 209 GACAAGCTCAAGAATCATTAGAAAATGTACTCATCGATCTTTATAAGAAAGGTGGAAGAA 268
Query 367 TAGAAGAGCAAGTTGAGTTAC-TGAAGC-AAAAGCTTTGGATGATATATCAAGGAGAAGC 424
|||||||||||||||| | | |||||| | || ||||||||||||||||||| ||||||
Sbjct 269 CAGAAGAGCAAGTTGAGCT-CTTGAAGCTACAA-CTTTGGATGATATATCAAGAAGAAGC 326
Query 425 ATTCAATGGCAAACCAACAAAGACTGCGAGGTCTCATGGCAAGAAGTTTCAGGTCACGGT 484
||||||||| |||||| |||| | |||||| ||||||||| ||| ||||||||||||||
Sbjct 327 ATTCAATGGAAAACCAGCAAAAATTGCGAGATCTCATGGCCGGAAATTTCAGGTCACGGT 386
Query 485 CGAGAAGGAAACCTCTAGGATCTTG 509
||||||||||||||||||||| |||
Sbjct 387 CGAGAAGGAAACCTCTAGGATGTTG 411
> AT1G49940.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Tetratricopeptide repeat (TPR)-like superfamily protein
(TAIR:AT1G04770.1); Has 40 Blast hits to 40 proteins in
9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI
BLink). | chr1:18488517-18491179 REVERSE LENGTH=994
Length=994
Score = 239 bits (129), Expect = 4e-62
Identities = 182/206 (88%), Gaps = 10/206 (5%)
Strand=Plus/Plus
Query 306 AGACAAGCTCAAGAATCATTAGACAATGTCCTCATCGATCTCTATAAGAAATGTGGGAGA 365
||||||||||||||||||||||| ||||| |||||||||||||||||| |||| |||
Sbjct 64 AGACAAGCTCAAGAATCATTAGAAAATGTACTCATCGATCTCTATAAG----GTGGAAGA 119
Query 366 A-TAGAAGAGCAAGTTGAGTTACTGAA-GCAAAAGCTTTGGATGATATATCAAGGAGAAG 423
| || |||||||||||||| | || || || ||| ||||||||||||||||||| |||||
Sbjct 120 ACTA-AAGAGCAAGTTGAGCT-CTTAAAGCTAAA-CTTTGGATGATATATCAAGAAGAAG 176
Query 424 CATTCAATGGCAAACCAACAAAGACTGCGAGGTCTCATGGCAAGAAGTTTCAGGTCACGG 483
|||||||||| |||||| |||||| |||||| ||||||||| ||| |||||||||||||
Sbjct 177 CATTCAATGGAAAACCAGCAAAGATTGCGAGATCTCATGGCC-GAAATTTCAGGTCACGG 235
Query 484 TCGAGAAGGAAACCTCTAGGATCTTG 509
|||||||||||||||||||||| |||
Sbjct 236 TCGAGAAGGAAACCTCTAGGATATTG 261
Score = 69.4 bits (37), Expect = 6e-11
Identities = 47/51 (92%), Gaps = 3/51 (6%)
Strand=Plus/Plus
Query 564 GTGTACCGGAAAGCTC-AGTTGATAGAGCCAGATGCAAACAAGGCTTGTAA 613
||||| |||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 264 GTGTATCGGAAA-CTCAAG-TGATAGAGCCAGATGCAAACAAGGCTTGTAA 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46868459151
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5