BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919175
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04870.2 | Symbols: PRMT10, ATPRMT10 | protein arginine meth... 1881 0.0
> AT1G04870.2 | Symbols: PRMT10, ATPRMT10 | protein arginine methyltransferase
10 | chr1:1373234-1375762 REVERSE LENGTH=1567
Length=1567
Score = 1881 bits (1018), Expect = 0.0
Identities = 1091/1126 (97%), Gaps = 5/1126 (0%)
Strand=Plus/Plus
Query 39 CGGCGGAGGAGGACCGTCGGCTCCAGTTGACAAAGAAGTCGACTACGCTCAGTACTTCTG 98
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 215 CGGCGGAGGAGGACCGTCGGCTCCAGTTGACAAAGAAGTTGACTACGCTCAGTACTTCTG 274
Query 99 TACTTACTCCTTCCTCTACCACCAGAAGGATATGCTCTCCGACCGTGTCCGTATGGATGC 158
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 TACTTACTCCTTCCTATACCACCAGAAGGATATGCTCTCCGACCGTGTCCGTATGGATGC 334
Query 159 TTACTTCAATGCCGTCTTCCAGAACAAACATCACTTTGAGGGCAAGACTGTCTTAGACGT 218
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 335 TTACTTCAACGCCGTCTTCCAGAACAAACATCACTTTGAGGGCAAGACTGTTTTAGACGT 394
Query 219 GGGCACCGGGAGTGGAATTCTTGCAATTTGGTCAGCTCAAGCTGGTGCCAGGAAGGTTTA 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 GGGCACCGGGAGTGGAATTCTTGCAATTTGGTCAGCTCAAGCTGGTGCCAGGAAGGTTTA 454
Query 279 TGCCGTTGAAGCTACTAAAATGGCTGATCATGCTCGTGCCCTTGTCAAAGCCAATAACCT 338
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 455 TGCCGTTGAAGCTACTAAGATGGCTGATCATGCTCGTGCCCTTGTCAAAGCCAATAACCT 514
Query 339 TGACCATATTGTTGAAGTCATTGAAGGGTCTGTCGAGGATATTTCATTACCTGAGAAAGT 398
|||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 515 TGACCATATTGTAGAAGTCATTGAAGGATCTGTCGAGGATATTTCATTGCCTGAGAAAGT 574
Query 399 TGACGTAATTATCTCGGAGTGGATGGGATACTTCCTTCTGCGGGAGTCCATGTTTGATTC 458
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 TGATGTAATTATCTCGGAGTGGATGGGATACTTCCTTCTGCGGGAGTCCATGTTTGATTC 634
Query 459 TGTGATTAGTGCTCGTGACCGATGGTTAAAGCCGACAGGTGTCATGTACCCTAGTCATGC 518
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 635 TGTGATTAGTGCTCGTGACCGATGGTTAAAGCCAACAGGTGTCATGTACCCTAGTCATGC 694
Query 519 TCGCATGTGGCTTGCACCCATCAAATCCAATATGGCAGATCGGAAGAGGAATGATTTCGA 578
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 695 TCGCATGTGGCTTGCACCCATCAAGTCCAATATAGCAGATCGGAAGAGGAATGATTTCGA 754
Query 579 TGGGGCAATGGCAGACTGGCATAACTTTTCGGATGAGATCAAAAGTTACTATGGGGTTGA 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 TGGGGCAATGGCAGACTGGCATAACTTTTCGGATGAGATCAAAAGTTACTATGGGGTTGA 814
Query 639 TATGGGAGTTTTAACAAAACCTTTTGCTGAAGAGCAAGAAAAGTATTACATACAGACGGC 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 815 TATGGGAGTTTTAACAAAACCTTTTGCTGAAGAGCAAGAAAAGTATTACATACAGACTGC 874
Query 699 TATGTGGAATGACTTGAATCCACAACAAATCATCGGCAC-CCCTACAATTGTAAAAGAGA 757
||||||||||||||||||||||||||||||||| ||||| ||| |||||||| || ||||
Sbjct 875 TATGTGGAATGACTTGAATCCACAACAAATCATAGGCACTCCC-ACAATTGTCAAGGAGA 933
Query 758 TGGATTGTTTGACAGCCTCCGTCAGTGAAATTGAGGAAGTCAGATCAAATGTATCGTCAG 817
|||||||||||||||| || ||||||||||| ||||||||||||||||||||| ||||||
Sbjct 934 TGGATTGTTTGACAGCATCTGTCAGTGAAATCGAGGAAGTCAGATCAAATGTAACGTCAG 993
Query 818 TCATCAATGTGGAGCACACAAGGCTATGTGGTTTTGGTGGATGGTTCGATGTTCAGTTCT 877
| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 TTATCAATATGGAGCATACAAGGCTATGTGGTTTTGGTGGATGGTTCGATGTTCAGTTCT 1053
Query 878 TGGGGAGAAAAGAAGACCCCGCACAGCAAGAAATCGAGTTGACCACAGCTCCAAGTGAGC 937
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 CGGGGAGAAAAGAAGACCCCGCACAGCAAGAAATCGAGTTGACCACAGCTCCAAGTGAGC 1113
Query 938 AGCACTGCACGCACTGGGGACAACAGGTATTCATTATGTCGAATCCTATAAATGTTGAGG 997
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1114 AGCACTGCACGCACTGGGGACAACAGGTTTTCATTATGTCGAATCCTATAAATGTTGAGG 1173
Query 998 AAGGTGATAATCTGAATCTTGGTTTGGTAATGAGCCGGTCCAAGGAAAATCACAGACTAA 1057
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1174 AAGGTGATAATCTGAATCTTGGTTTGTTAATGAGCCGGTCCAAGGAAAATCACCGACTAA 1233
Query 1058 TGGAGATTGAGCTTAAATGTGAAATAAAAGAGGCATCTGGTAACCCCAAAGAATCTTTCA 1117
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1234 TGGAGATTGAGCTTAACTGTGAAATAAAAGAAGCATCTGGTAACCCCAAAGAATCTTTCA 1293
Query 1118 AGAAGACTTACTTCATAGAGTGATTGATT--T-ATACAGAAGCTTT 1160
||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct 1294 AGAAGACTTACTTCATAGAGTGATTGATTGATTATAGAGAAGCTTT 1339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56927418030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5