BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919181
Length=944
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04930.2 | Symbols: | hydroxyproline-rich glycoprotein fami... 695 0.0
> AT1G04930.2 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr1:1396291-1399053 REVERSE LENGTH=1409
Length=1409
Score = 695 bits (376), Expect = 0.0
Identities = 509/571 (89%), Gaps = 17/571 (3%)
Strand=Plus/Plus
Query 1 CAAATTCCTTCCGCCGTCGGAATGTCTATTCCCGATCCCAACTCCTCCGCATCTGTAACG 60
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 45 CAAATTCCTTCCGCCGTCGGAATGTCAATTCCCGATCCCAACTCCTCCGCATCTCTAACG 104
Query 61 GTGTCTCCGTCTCTCTCCACCACATCGGAAACTCCGGCGATACCAGCAAACACTGTCAGA 120
|||||||||||||| |||||| ||||||||||||||| | ||||| ||||||||| |||
Sbjct 105 GTGTCTCCGTCTCTATCCACCGCATCGGAAACTCCGGTAACACCAGTAAACACTGTTAGA 164
Query 121 CCACCGCCGTCTCAGCCACCTCCTGCTCCGCCGCCACCACCGCCTCCGACTTACAGACCC 180
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 165 CCACCGCCGTCTCAGCCACCTCCTGCTCCGCCGCCACTACCGCCGCCGACTTACAGACCC 224
Query 181 ATAGCTCCGCTTCGCCATCCTAATCCGTT--A-CAACAATCTGCTCATAATAATAACCTC 237
||||||||||||||||| ||||||||||| | |||||||||||| ||| ||||||||||
Sbjct 225 ATAGCTCCGCTTCGCCACCCTAATCCGTTCCAACAACAATCTGCTTATAGTAATAACCTC 284
Query 238 TACGCACAGTCAATTCCAGTCAGACGCCAAATTCAAGATCCGTCAGCAGTTCTTTACCCG 297
|||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 285 TACGCACATTCGATTCCGGTCAGACGCCAAATTCAAGATCCGTCAGCTGTTCTTTACCCG 344
Query 298 ---G-------G--TCGAGGGTTTTCAGCCCGACCCGTTCGAGGGTTCGTCGCTGATCCT 345
| | ||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 345 TTTGCTCTACCGGGTCGAGGGTTTTCAGCCCGACCTGTTCGAGGATTCGTCGCAGATCCT 404
Query 346 TCCTTGACGGCCGGTAATCAGAGTGGGTACCCTCCTCGCCCGAGTTTTTCTTACAATCCT 405
||| ||||||| ||||||| |||||||||||||||||||||||||||| ||||| |||||
Sbjct 405 TCCGTGACGGCTGGTAATCTGAGTGGGTACCCTCCTCGCCCGAGTTTTACTTACGATCCT 464
Query 406 CGACAATTTGGGCCGAGTCAAATGGAATCCTTGTTGCAGCAGTACT-TAAGGGGGAGACT 464
||| || || || | ||||||||||||||||||||||||||| | |||||| ||||
Sbjct 465 GGACCATATGAGCAGCGTCAAATGGAATCCTTGTTGCAGCAGTT-TATAAGGGAGAGAAA 523
Query 465 TCCTCAGATTAATCCGTTACCACGCCTTGGATCGGGTTCTCCTGTTGGGTCGGGTCTCAT 524
|||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 524 TCCTCAGATTCGTCCATTACCACGCCTTGGATTGGGTTCTCCTGTTGGGTTGGGTCCCAT 583
Query 525 GAGAGGAAGTCCTCAGTTTCTGCAACCGCGG 555
|||| ||||||||| |||||||||||||||
Sbjct 584 TAGAGCAAGTCCTCAATTTCTGCAACCGCGG 614
Score = 569 bits (308), Expect = 1e-161
Identities = 348/367 (95%), Gaps = 3/367 (1%)
Strand=Plus/Plus
Query 556 GTTGCCCCGCCCCCAACTTCAATTCTAGACACTGGCAGGAATAGAAAGGCCAGAAGCAAG 615
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 705 GTTGCCCCGCCCCCAACTTCAATTCTAGACACTAGCAGGAATAGAAAGGCCAGAAGCAAG 764
Query 616 GATGGGGCTCTTGTTGTTGTTAGAGGGAGAAAGGTCAGAATCACTGA-GGG--AGCTTCT 672
||||||||||||| ||||||||||||||||||||| |||||||||| ||| |||||
Sbjct 765 GATGGGGCTCTTGCCGTTGTTAGAGGGAGAAAGGTCCGAATCACTGAGGGGTCTTCTTCT 824
Query 673 CTTTATTCACTTGGTCGATCATGGTTAAAAAATGGTGCTCACGTAGGAATTCAGCCGCAA 732
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 825 CTTTATTCACTTGGTCGATCGTGGTTGAAAAATGGTGCTCACGTTGGAATTCAGCCGCAA 884
Query 733 AGGAGTGGTATAATGAAACCTTTGCCAAAGCCGTTACCTGTGGATATAACAACAGAGACA 792
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 885 AGGAGTGGTATAATGAAACCTTTGCCAAAACCGTTACCTGTGGATTTAACAACAGAGACA 944
Query 793 AGTGTGCCAGATGATCCAGATGAAGAATCAGCTGATGAAGAAAAAGAGGACGAGGAAGCT 852
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 945 AGTGTACCAGATGATCCAGATGAAGAATCAGCGGATGAAGACAAAGAGGACGAGGAAGCT 1004
Query 853 GTAAAGCAATTATCAGAGAAGGATCTTTTGAAAAGACACATCGAGCGAGCTAAGAAAGTC 912
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 GTAAAGCAATTATCTGAGAAGGATCTTTTGAAAAGACACATCGAGCGAGCTAAGAAAGTC 1064
Query 913 CGAGCAC 919
|| ||||
Sbjct 1065 CGTGCAC 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46165181093
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5