BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919182
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04940.1 | Symbols: TIC20 | translocon at the inner envelope... 1404 0.0
AT1G04945.3 | Symbols: | HIT-type Zinc finger family protein |... 1258 0.0
> AT1G04940.1 | Symbols: TIC20 | translocon at the inner envelope
membrane of chloroplasts 20 | chr1:1399182-1400770 FORWARD
LENGTH=1138
Length=1138
Score = 1404 bits (760), Expect = 0.0
Identities = 833/868 (96%), Gaps = 5/868 (1%)
Strand=Plus/Plus
Query 1 AGGCATTTTAGTTGGTAAGGATGATAATTGGGTGCAGCACGCCAAGTGCACATGTTCTAA 60
||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct 140 AGGCATTTTAGTTGGTAAGGATGATAACTGGATACAGCACGCCAAGTGCACATGTTCTAA 199
Query 61 CGAGTTCTCGGGCATTCAAATCATCATCATACAGAGCTGCATCAGGACGGACTCAACATT 120
||| |||||||||||||| ||||||||||| ||||||||| |||||| |||||||||||
Sbjct 200 TGAGCTCTCGGGCATTCAAGTCATCATCATATAGAGCTGCAGCAGGACAGACTCAACATT 259
Query 121 ATCTTGCTCGAAGCTCATCGTCTGTCATAAAGAACTCTTGGGGAT---CACCTTCACCAT 177
||||||||||||| |||| | ||||| |||||||||| ||||||| |||||||||| |
Sbjct 260 ATCTTGCTCGAAGTTCATTGCCTGTCGTAAAGAACTCGTGGGGATCACCACCTTCACC-T 318
Query 178 TT-AATGAGCTTCCGAGAGTGTCAAGAGGTGTGCCTCTGTCATATCTCTCAGCCTCGTCT 236
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 TTCAATGAGCTTCCGAGAGTGTCAAGAGGTGTGCCTCTGTCATATCTCTCAGCCTCGTCT 378
Query 237 TCTCTGCTTCTTAATGGAGAACAAGGTAGTCTGTCTGGTACATTACCTGTGTTACCCGTC 296
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 379 TCTCTGCTTCTGAATGGAGAACAAGGTAGTCTATCTGGTACATTACCTGTGTTACCTGTC 438
Query 297 CGCAGAAAAACTCTTTTGACTCCACGAGCATCAAAAGATGTTCCTTCTAGCTTCCGATTT 356
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 439 CGCAGAAAAACTCTTTTGACTCCACGAGCGTCAAAAGATGTACCTTCTAGCTTCCGATTT 498
Query 357 CCCCCAATGACCAAGAAGCCACAATGGTGGTGGAGAACTTTGGCATGCCTGCCTTACCTA 416
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 499 CCCCCGATGACCAAGAAGCCACAATGGTGGTGGAGAACTTTGGCTTGCCTGCCTTACCTA 558
Query 417 ATGCCACTGCATGAAACTTGGATGTATGCAGAAACCGCTTACCATCTCCACCCATTCCTA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 ATGCCACTGCATGAAACTTGGATGTATGCAGAAACCGCTTACCATCTCCACCCATTCCTA 618
Query 477 GAAGATTTTGAATTCTTAACCTACCCATTTCTGGGGGCCATCGGAAGATTACCAAGCTGG 536
|||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 619 GAAGATTTTGAATTCTTAACCTACCCATTTCTAGGCGCCATAGGAAGATTACCAAGCTGG 678
Query 537 TTCCTCATGGCTTACTTCTTTGTAGCTTATCTAGGGATAGTGCGAAGAAAAGAATGGCCT 596
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 TTCCTCATGGCTTACTTTTTTGTAGCTTATCTAGGGATAGTGCGAAGAAAAGAATGGCCT 738
Query 597 CACTTCTTCAGGTTCCATGTAGTGATGGGTATGCTGCTTGAAATCGCACTCCAGGTTATA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 CACTTCTTCAGGTTCCATGTAGTGATGGGTATGCTGCTTGAAATCGCACTCCAGGTTATA 798
Query 657 GGAACCGTTAGCAAGTGGATGCCTCTTGGAGTCTATTGGGGTAAGTTTGGGATGCATTTC 716
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 GGGACCGTTAGCAAGTGGATGCCTCTTGGAGTCTATTGGGGTAAGTTTGGGATGCATTTC 858
Query 717 TGGACCGCTGTTGCATTTGCTTATCTGTTTACCGTCCTTGAAAGCATACGGTGTGCACTT 776
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 TGGACTGCTGTTGCGTTTGCTTATCTGTTTACCGTCCTTGAAAGCATACGGTGTGCACTT 918
Query 777 GCGGGTATGTACGCAGACATCCCATTTGTCTGTGATGCTGCCTATATCCAGATTCCGTAC 836
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 919 GCGGGTATGTACGCAGACATCCCGTTTGTCTGTGATGCTGCCTATATCCAGATTCCGTAC 978
Query 837 GACTAAGAAGAAACAACATTAGATCGTT 864
|||||||||||||||||||| |||||||
Sbjct 979 GACTAAGAAGAAACAACATTGGATCGTT 1006
> AT1G04945.3 | Symbols: | HIT-type Zinc finger family protein
| chr1:1399174-1403038 FORWARD LENGTH=2532
Length=2532
Score = 1258 bits (681), Expect = 0.0
Identities = 750/783 (96%), Gaps = 5/783 (1%)
Strand=Plus/Plus
Query 2 GGCATTTTAGTTGGTAAGGATGATAATTGGGTGCAGCACGCCAAGTGCACATGTTCTAAC 61
|||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct 192 GGCATTTTAGTTGGTAAGGATGATAACTGGATACAGCACGCCAAGTGCACATGTTCTAAT 251
Query 62 GAGTTCTCGGGCATTCAAATCATCATCATACAGAGCTGCATCAGGACGGACTCAACATTA 121
||| |||||||||||||| ||||||||||| ||||||||| |||||| ||||||||||||
Sbjct 252 GAGCTCTCGGGCATTCAAGTCATCATCATATAGAGCTGCAGCAGGACAGACTCAACATTA 311
Query 122 TCTTGCTCGAAGCTCATCGTCTGTCATAAAGAACTCTTGGGGAT---CACCTTCACCATT 178
|||||||||||| |||| | ||||| |||||||||| ||||||| |||||||||| ||
Sbjct 312 TCTTGCTCGAAGTTCATTGCCTGTCGTAAAGAACTCGTGGGGATCACCACCTTCACC-TT 370
Query 179 T-AATGAGCTTCCGAGAGTGTCAAGAGGTGTGCCTCTGTCATATCTCTCAGCCTCGTCTT 237
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TCAATGAGCTTCCGAGAGTGTCAAGAGGTGTGCCTCTGTCATATCTCTCAGCCTCGTCTT 430
Query 238 CTCTGCTTCTTAATGGAGAACAAGGTAGTCTGTCTGGTACATTACCTGTGTTACCCGTCC 297
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 431 CTCTGCTTCTGAATGGAGAACAAGGTAGTCTATCTGGTACATTACCTGTGTTACCTGTCC 490
Query 298 GCAGAAAAACTCTTTTGACTCCACGAGCATCAAAAGATGTTCCTTCTAGCTTCCGATTTC 357
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 491 GCAGAAAAACTCTTTTGACTCCACGAGCGTCAAAAGATGTACCTTCTAGCTTCCGATTTC 550
Query 358 CCCCAATGACCAAGAAGCCACAATGGTGGTGGAGAACTTTGGCATGCCTGCCTTACCTAA 417
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 551 CCCCGATGACCAAGAAGCCACAATGGTGGTGGAGAACTTTGGCTTGCCTGCCTTACCTAA 610
Query 418 TGCCACTGCATGAAACTTGGATGTATGCAGAAACCGCTTACCATCTCCACCCATTCCTAG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TGCCACTGCATGAAACTTGGATGTATGCAGAAACCGCTTACCATCTCCACCCATTCCTAG 670
Query 478 AAGATTTTGAATTCTTAACCTACCCATTTCTGGGGGCCATCGGAAGATTACCAAGCTGGT 537
||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 671 AAGATTTTGAATTCTTAACCTACCCATTTCTAGGCGCCATAGGAAGATTACCAAGCTGGT 730
Query 538 TCCTCATGGCTTACTTCTTTGTAGCTTATCTAGGGATAGTGCGAAGAAAAGAATGGCCTC 597
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 TCCTCATGGCTTACTTTTTTGTAGCTTATCTAGGGATAGTGCGAAGAAAAGAATGGCCTC 790
Query 598 ACTTCTTCAGGTTCCATGTAGTGATGGGTATGCTGCTTGAAATCGCACTCCAGGTTATAG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 ACTTCTTCAGGTTCCATGTAGTGATGGGTATGCTGCTTGAAATCGCACTCCAGGTTATAG 850
Query 658 GAACCGTTAGCAAGTGGATGCCTCTTGGAGTCTATTGGGGTAAGTTTGGGATGCATTTCT 717
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 GGACCGTTAGCAAGTGGATGCCTCTTGGAGTCTATTGGGGTAAGTTTGGGATGCATTTCT 910
Query 718 GGACCGCTGTTGCATTTGCTTATCTGTTTACCGTCCTTGAAAGCATACGGTGTGCACTTG 777
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 GGACTGCTGTTGCGTTTGCTTATCTGTTTACCGTCCTTGAAAGCATACGGTGTGCACTTG 970
Query 778 CGG 780
|||
Sbjct 971 CGG 973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5