BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919186
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04970.1 | Symbols: | lipid-binding serum glycoprotein fami... 2571 0.0
> AT1G04970.1 | Symbols: | lipid-binding serum glycoprotein family
protein | chr1:1411170-1413627 FORWARD LENGTH=1709
Length=1709
Score = 2571 bits (1392), Expect = 0.0
Identities = 1491/1539 (97%), Gaps = 6/1539 (0%)
Strand=Plus/Plus
Query 3 aaaaaaaGCTTTGAATTTCCGCCATGGATGCTGGACGATGCTTTCTCTTTCTTCTATTAC 62
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 24 AAAAAAAGCTTTGAATATCCGCCATGGATGTTGGACGATGCTTTCTCTTTCTTCTATTAC 83
Query 63 CAAGTTTCTTCTTCTTGCCTTCACAAACGCAGAGCAGCGATTCATTCACATCGGTTCTCG 122
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 84 CAAGTTTCTTCTTCTTGCCTTCACAAACGCAGAGCACCGATTCATTCACATCGGTTCTCG 143
Query 123 TATCTCAAAACGGACTCGATTTCGTCAAAAATCTTCTAGTTAACAAAGCAATCGCGTCGA 182
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 144 TATCTCAAAACGGACTCGATTTCGTCAAAAATCTTCTAGTTAACAAAGCTATCGCGTCGA 203
Query 183 TTATACCTCTCCAGATTCCCAGGATCGAGAAATCTGTGAAAATCCCGTTCCTCGGAGGAA 242
|||||||||||||||||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct 204 TTATACCTCTCCAGATTCCCAGAATTGAGAAATCTATGAAAATCCCGTTCCTTGGAGGAA 263
Query 243 TCGATGTCGTTGTTTCGAATCTGACGATATACGAGCTTGACGTTGCGTCGTCTTATGTTA 302
||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 264 TCGATGTTGTTGTCTCGAATCTCACGATATACGAGCTTGACGTTGCGTCATCTTATGTTA 323
Query 303 AGCTTGGTGAGACAGGTGTTGTCATCGTCGCTTCAGGGACGACTTGTAATTTGAGTATGA 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 AGCTTGGTGAGACAGGTGTTGTCATCGTCGCTTCAGGGACGACTTGTAATTTGAGTATGA 383
Query 363 ATTGGCATTATTCTTACAGTACTTGGCTTCCTCCTATTGAAATCTCTGATCAGGGTATTG 422
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 384 ATTGGCATTATTCTTACAGTACTTGGCTTCCTCCTATTGAAATATCTGATCAGGGTATTG 443
Query 423 CATCTGTTCAGGTTCAAGGCATGGAAATCGGGCTGTCTCTAGGCTTGAAAACTGATGAAG 482
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 444 CATCTGTTCAGGTTCAAGGCATGGAAATCGGGCTCTCTCTAGGCTTGAAAAGTGATGAAG 503
Query 483 GAGGCTTAAAACTTTCCCTTTCGGAATGTGGATGCCATGTGGAAGACATCACCATTGAGT 542
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 504 GAGGCTTAAAACTTTCTCTTTCGGAATGTGGATGCCATGTGGAAGACATTACCATTGAGT 563
Query 543 TGGAAGGAGGAGCATCATGGTTTTATCAGGGGATGGTTAATGCATTTAAAGACCAAATTG 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 TGGAAGGAGGAGCATCATGGTTTTATCAGGGGATGGTTAATGCATTTAAAGACCAAATTG 623
Query 603 GGTCAAGTGTGGAAAGTACCATTGCCAAGAAACTCACTGAAGGAGTATCAGACCTTGATT 662
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 624 GGTCAAGTGTGGAAAGTACCATTGCCAAGAAACTCACGGAAGGAGTATCAGACCTTGATT 683
Query 663 CATTCCTACAAAACCTTCCAAAGGAAATCCCAGTGGATGATAATGCTGCCCTTAATGTCA 722
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 684 CATTCCTACAAAGCCTTCCAAAGGAAATCCCAGTGGATGATAATGCTGACCTTAATGTCA 743
Query 723 CTTTCACCAGTGATCCTATTTTGAGAAATTCATCTATCACTTTTGAGATTGATGGCTTGT 782
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 744 CTTTCACCAGTGATCCTATATTGAGAAATTCATCTATCACTTTTGAGATTGATGGCTTGT 803
Query 783 TCACCAAAGGAGAAACAAATCAAGTCTTAAAGTCCTTCTTCAGAAAGTCTGTATCTTTAG 842
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 804 TCACCAAAGGAGAAACAAATCAAGTCTTAAAATCCTTCTTCAAAAAGTCTGTATCTTTAG 863
Query 843 TTATCTGCCCTGGAAATTCTAAAATGCTCGGAATTTCAGTGGATGAAGCTGTTTTTAACT 902
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 864 TTATCTGCCCTGGAAATTCTAAAATGCTCGGAATTTCAGTTGACGAAGCTGTTTTTAACT 923
Query 903 CTGCTGCAGCTTTGTACTATAATGCAGACTTTGTGCAATGGGTTGTGGATAAAATACCAG 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 CTGCTGCAGCTTTGTACTATAATGCAGACTTTGTGCAATGGGTTGTGGATAAAATACCAG 983
Query 963 AGCAGGCTCTTTTAAACACTGCTAGGTGGAGGTTCATCATTCCACAACTATACAAGAAGT 1022
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 984 AGCAGTCTCTTTTAAACACTGCTAGGTGGAGGTTCATCATTCCACAACTATACAAGAAAT 1043
Query 1023 ACCCGAACCAGGATATGAGTCTGAACATCAGTTTGTCTTCACCTCCGCGTGTAAAGATAT 1082
|||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||
Sbjct 1044 ACCCGAACCAGGATATGAATCTGAACATCAGTTTGTCCTCACCTCCGCTTGTAAAGATAT 1103
Query 1083 CAGAGCAATACGTTGGAGCTAATGTTAATGCAGACCTAGTAATCAATGTTCTAGATGCAA 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 CAGAGCAATACGTTGGAGCTAATGTTAATGCAGACCTAGTAATCAATGTTCTAGATGCAA 1163
Query 1143 GCCAAGTTATACCAGTAGCATGCATCTCCTTGATGATCCGGGGATCTGGTGCTCTCAGAG 1202
|||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 ACCAAGTAATACCTGTAGCTTGCATCTCCTTGATGATCCGGGGATCTGGTGCTCTCAGAG 1223
Query 1203 TCATGGGTAATAACCTTGGAGGCAGCGTAAGTTTAGAAGATTTCTCCATGTCTTTGAAAT 1262
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 TCATGGGCAATAACCTTGGAGGCAGCGTAAGTTTAGAAGATTTCTCCATGTCTTTGAAAT 1283
Query 1263 GGAGCAACATTGGTAATCTCCATCTGCATCTTCTTCAGCCAATAGTGTGGACTGTTATAC 1322
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 GGAGCAACATTGGAAATCTCCATCTGCATCTTCTTCAGCCAATAGTGTGGACTGTTATAC 1343
Query 1323 AAACAGTGTTTGTGCCATATGCAAATGACCATCTAGAAAAGGGATTCCCGTTGCCCATAA 1382
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1344 AAACAGTGTTTGTGCCATATGCAAATGACCACCTAGAAAAGGGATTCCCGTTGCCCATAA 1403
Query 1383 TCCACGGATTTACACTTCAGAATGCGGAAATCATCTGCTCA-AGCTCTGAAATCACAGTT 1441
| |||||||| |||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1404 TGCACGGATTCACACTTCAGAATGCGGAAATCATCTGCTCAGAA-TCTGAAATCACAGTT 1462
Query 1442 TGCAGCGATGTCGCCTACTTGGATTCGTCCCAACAGCCTCAATGGCGTTTAAAGCTACCA 1501
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1463 TGCAGCGATGTCGCCTACTTGGATTCGTCCCAACAGCCTCAATGGC-TTTGAAGCTACCA 1521
Query 1502 CGATCTACGACTTGGAAACCCAACT--T-GTAGTTTACA 1537
|||||||||||||||||||| |||| | ||||||||||
Sbjct 1522 CGATCTACGACTTGGAAACCTAACTCGTTGTAGTTTACA 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76606031670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5