BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919192
Length=1012
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05010.1 | Symbols: EFE, ACO4, EAT1 | ethylene-forming enzym... 1661 0.0
> AT1G05010.1 | Symbols: EFE, ACO4, EAT1 | ethylene-forming enzyme
| chr1:1431190-1432858 REVERSE LENGTH=1364
Length=1364
Score = 1661 bits (899), Expect = 0.0
Identities = 968/1002 (97%), Gaps = 1/1002 (0%)
Strand=Plus/Plus
Query 12 GAGAGAGAGATGGAGAGTTTCCCGATCATCAGTCTCGAGAAGCTTAATGGAGAAGAGAGA 71
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 155 GAGAGAGAGATGGAGAGTTTCCCGATCATCAATCTCGAGAAGCTTAATGGAGAAGAGAGA 214
Query 72 GCAATCACGATGGAGAAGATCAAAGACGCTTGTGAAAACTGGGGCTTCTTTGAGTGTGTG 131
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 GCAATCACTATGGAGAAGATCAAAGACGCTTGTGAAAACTGGGGCTTCTTTGAGTGTGTG 274
Query 132 AACCATGGGATTTCACACGAGCTTTTGGACAAAGTGGAGAAGATGACGAAGGAACACTAC 191
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 275 AACCATGGGATTTCACTCGAGCTTTTGGACAAAGTGGAGAAGATGACCAAGGAACATTAC 334
Query 192 AAGAAGTGCATGGAAGAAAGATTCAAGGAATCGATCAAGAACAGAGGACTTGACTCTCTT 251
||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 335 AAGAAGTGCATGGAAGAGAGATTCAAGGAATCGATTAAGAACAGAGGTCTTGACTCTCTT 394
Query 252 CGCTCTGAAGTCAACGACGTTGACTGGGAATCAACTTTCTACCTCAAGCACCTTCCCGTC 311
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 395 CGCTCTGAAGTCAACGACGTTGACTGGGAATCCACTTTCTACCTCAAGCACCTTCCCGTC 454
Query 312 TCTAATATCTCCGATGTCCCTGATCTCGACGACGATTACCGGACGTTGATGAAAGAGTTC 371
||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| |||
Sbjct 455 TCTAATATCTCCGATGTCCCTGATCTCGACGACGATTACAGAACGTTAATGAAAGACTTC 514
Query 372 GCCGGAAAGATAGAGAAGTTATCGGAGGAGCTATTGGATCTGCTGTGCGAGAATCTCGGT 431
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 515 GCCGGAAAGATAGAGAAGTTGTCGGAGGAGCTACTGGATCTGCTGTGCGAGAATCTCGGT 574
Query 432 TTAGAGAAGGGTTATCTGAAAAAGGTGTTTTACGGGTCGAAAAGACCGACTTTTGGAACC 491
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 TTAGAGAAGGGTTATTTAAAAAAGGTGTTTTACGGGTCGAAAAGACCGACTTTTGGAACC 634
Query 492 AAAGTCAGCAATTATCCACCTTGTCCTAAACCGGACCTAGTCAAGGGTCTCCGAGCCCAC 551
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 635 AAAGTCAGCAATTATCCACCTTGTCCTAATCCGGACCTAGTCAAGGGTCTCCGAGCCCAC 694
Query 552 ACCGACGCCGGTGGCATCATCCTCCTCTTCCAAGATGACAAAGTCAGTGGACTTCAGCTT 611
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 695 ACCGACGCCGGCGGCATCATCCTCCTCTTCCAAGACGACAAAGTCAGTGGACTTCAGCTT 754
Query 612 CTTAAAGACGGCGAGTGGGTCGATGTTCCTCCGGTTAAGCATTCAATCGTCGTTAATCTC 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 CTTAAAGACGGCGAGTGGGTCGATGTTCCTCCGGTTAAGCATTCAATCGTCGTTAATCTC 814
Query 672 GGTGATCAGCTTGAGGTGATAACCAATGGGAAGTACAAGAGTGTGGAACACAGAGTGATA 731
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 815 GGCGATCAACTTGAGGTGATAACCAATGGGAAGTACAAGAGTGTGGAACATAGAGTGCTA 874
Query 732 TCTCAGACAGACGGAGAAGGAAGAATGTCGATCGCATCATTCTACAATCCGGGAAGCGAC 791
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 875 TCTCAGACAGACGGAGAAGGAAGAATGTCGATCGCATCATTCTATAATCCGGGAAGCGAC 934
Query 792 TCTGTTATTTTTCCGGCACCGGAGTTGATCGGAAAAGAACCGGAGAAGGAGGAGAAAGAG 851
||||||||||||||||| |||||| |||||||||||||| | ||||||||| ||||||||
Sbjct 935 TCTGTTATTTTTCCGGCGCCGGAGCTGATCGGAAAAGAAGCAGAGAAGGAGAAGAAAGAG 994
Query 852 AACTATCCGAGATTTGTGTTCGAAGATTACATGAAACTCTACTCTGCTGTCAAGTTTCAG 911
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 995 AACTATCCGAGATTTGTGTTTGAAGATTACATGAAACTCTACTCTGCTGTCAAGTTTCAG 1054
Query 912 GCCAAGGAACCAAGGTTTGAAGCCATGAAAGCTATGGAGACAACTGTGGCCAACAATGTT 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 GCCAAGGAACCAAGGTTTGAAGCCATGAAAGCTATGGAGACAACTGTGGCCAACAATGTT 1114
Query 972 GGACCATTGGCCACTGCGTGAATGA-ATGTAACTTATTAATA 1012
||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1115 GGACCATTGGCCACTGCGTGAATGATATGTAACTGGTTAATA 1156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49581103089
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5