BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919193
Length=1974
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05020.1 | Symbols: | ENTH/ANTH/VHS superfamily protein | c... 2422 0.0
> AT1G05020.1 | Symbols: | ENTH/ANTH/VHS superfamily protein |
chr1:1435254-1437667 REVERSE LENGTH=2414
Length=2414
Score = 2422 bits (1311), Expect = 0.0
Identities = 1420/1473 (96%), Gaps = 6/1473 (0%)
Strand=Plus/Plus
Query 3 AAAAG-GCGACGACGAGGACAATGCCGAGCAAGCTGAAAAAAGCGATTGGTGCGGTTAAA 61
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 302 AAAAGCGCGACGACGAGGACAATGCCGAGCAAGCTTAAAAAAGCGATTGGTGCGGTTAAA 361
Query 62 GATCAAACGAGCATTAGCTTCGCCAAAGTCGCTAACGGAGCCACCGGAGGCGGCGATCTC 121
||||| || ||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 362 GATCAGACAAGCATTAGCCTCGCCAAAGTTGCTAACGGAGCCACCGGAGGCGGCGATCTC 421
Query 122 ACCACTCTCGAGGTTGCGATCTTGAAAGCTACGAGCCACGACGAGGAAGTCCCAATCGAC 181
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 ACGACTCTCGAAGTTGCGATCTTGAAAGCTACGAGCCACGACGAGGAAGTCCCAATCGAC 481
Query 182 GATCGACTCGTAACAGAAATCCTCGGAATCATATCCTCCAAGAAATCTCACGCCGCCTCT 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GATCGACTCGTAACAGAAATCCTCGGAATCATATCCTCCAAGAAATCTCACGCCGCCTCT 541
Query 242 TGCGCCGCCGCGATCGGTCGCCGTATCGGGCGGACTCGGAATTGGATCGTCGCGCTCAAA 301
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 542 TGCGCCGCCGCGATCGGTCGCCGTATCGGGCGTACACGGAATTGGATCGTCGCGCTCAAA 601
Query 302 TCCCTAGTCCTCGTCCTCAGGATTTTCCAAGACGGTGATCCTTATTTCCCTCGCGAAGTC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TCCCTAGTCCTCGTCCTCAGGATTTTCCAAGACGGTGATCCTTATTTCCCTCGCGAAGTC 661
Query 362 CTCCACGCCATGAAACGTGGCGCCAAAATCCTCAATCTCTCCAGCTTCCGCGACGATTCG 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CTCCACGCCATGAAACGTGGCGCCAAAATCCTCAATCTCTCCAGCTTCCGCGACGATTCG 721
Query 422 AACTCTTGCCCTTGGGATTTCACAGCTTTCGTCCGTACATTCGCGCTTTACCTCGACGAA 481
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 722 AACTCGTGCCCTTGGGATTTCACTGCTTTCGTCCGTACATTCGCGCTTTACCTCGACGAA 781
Query 482 CGTCTCGATTGCTTCCTCACCGGAAAATTACAGAGACGGTACACAATCCGAGACCAAACC 541
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 782 CGTCTCGATTGCTTCCTCACCGGAAAATTACAGAGACGGTACACAAACCGAGAACAAACC 841
Query 542 GGAAGAATCAGCACCAACACAACCAACTCAAGATCCCGGTTTAATCCCAAAACCGGAATA 601
|||||||||||||||||| |||| ||| |||||||||||||||||||||| |||||||
Sbjct 842 GGAAGAATCAGCACCAACTCAAC-AAC--AAGATCCCGGTTTAATCCCAAAGCCGGAATT 898
Query 602 AAATCCCACGAACCGGCGGTTCGAGATATGAAACCGGTAATGCTTCTTGACAAAATCACG 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AAATCCCACGAACCGGCGGTTCGAGATATGAAACCGGTAATGCTTCTTGACAAAATCACG 958
Query 662 TATTGGCAAAGATTACTAGACAGAGCAATCGCGACGCGGCCAACGGGAGATGCAAAAGCG 721
|||||||||| |||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 959 TATTGGCAAAAATTACTAGACAGAGCAATCGCGACGCGGCCGACGGGAGACGCGAAAGCC 1018
Query 722 AACAAGCTCGTGAAAATGTCGCTATACGCCGTCATGCAAGAGACTTTTGATCTTTACAGA 781
|||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1019 AACAGGCTCGTGAAAATGTCGCTTTACGCCGTCATGCAAGAGAGTTTTGATCTTTACAGA 1078
Query 782 GACATTTCCGATGGATTAGCGCTTTTGTTAGACAGTTTCTTCCATTTGCAATACCAATCT 841
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1079 GACATTTCCGATGGATTAGCGCTTTTGTTAGACAGTTTCTTCCATCTGCAATACCAATCT 1138
Query 842 TGCATTCA-TGCGTTTCAAGCTTGTGTTCGAGCTTCGAAACAGTTCGAAGAGCTTAACGG 900
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TGCAT-CAATGCGTTTCAAGCTTGTGTTCGAGCTTCGAAACAGTTCGAAGAGCTTAACGC 1197
Query 901 ATTCTACGATATTTGCAAATCGATCGGTATAGGAAGAACATCGGAGTATCCTAGCATTCA 960
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ATTCTACGATCTTTCCAAATCGATCGGTATAGGAAGAACATCGGAGTATCCTAGCATTCA 1257
Query 961 AAAGATCTCTTTAGAGCTTCTTGAGACATTGCAAGAGTTTCTGAAAGATCAATCGTCGTT 1020
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1258 AAAGATCTCTTTAGAGCTTCTTGAGACATTGCAAGAGTTTTTAAAAGATCAATCGTCGTT 1317
Query 1021 TCCAGCGAGCTCGGGGTTGTATCCGTCACCGAATAGTCTTCTTCCTCCGCCTCCATCGTC 1080
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1318 TCCAGCGAGCTCAGGGTTGTATCCGTCACCGAATAGTTTTCTTCCTCCGCCTCCATCGTC 1377
Query 1081 TAAAGATTCAGCGGTTTCAAGCTCGCTTGATTTTGGAGATTCCACGATTGATACGTCGGA 1140
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1378 CAAAGATTCAGCGGTTTCAAGCTCGCTTGATTTTGGGGATTCCACGATTGATACGTCGGA 1437
Query 1141 GAGGTATTCGGATTACGGGTCGTTTCGTAGTACTTCGTTGGAGGATTTGATGAGCAGGAC 1200
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GAGGTATTCAGATTACGGGTCGTTTCGTAGTACTTCGTTGGAGGATTTGATGAGCAGGAC 1497
Query 1201 TGAAGCAGGGACTAGTAGTCCTCCGATGTCTTGTCATTCTGAGCCTTATGGAGGAGGACG 1260
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 1498 TGAAGCAGGGACTAGTAGTCCTCCAATGTCTTGTCATTCTGAGCCATACGGAGGAGGACG 1557
Query 1261 AGATGATCCTAATGGAAATAATTTCGATACGGTTTCGACTAAATCGCTTCCGAATAATCC 1320
||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1558 AGATGATCCTAATGGGAATAATTTTGATACGGTTTCGACTAAATCGCTTCCCAATAATCC 1617
Query 1321 CTCTGTTTCTGCTTCCAATCTCACATTGGACCTATTGTCCTTGGATGACGTAAGTAACAC 1380
||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct 1618 CTCTGTTTCTGCTTCCAATCTCATATTAGACCTATTGTCATTGGATGACGTAAGTAACAC 1677
Query 1381 GGCAGAAGCAAAAGATGTTGAAGACAAGAAGAAGCAAGATGATTCTAAGGCAGAGACTTT 1440
|||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1678 GGCAGAAGCAGAAGATGTTGAAGACAAGAAGAAGCAAGACGATTCAAAGGCAGAGACTTT 1737
Query 1441 CGATCCTTGGGAGGCGTTGATGTTGAGAGATGA 1473
|||||||||||||||||||||||||||||||||
Sbjct 1738 CGATCCTTGGGAGGCGTTGATGTTGAGAGATGA 1770
Score = 723 bits (391), Expect = 0.0
Identities = 477/517 (92%), Gaps = 11/517 (2%)
Strand=Plus/Plus
Query 1463 TTGAGAGATGAACCTTCAACCTCTGAGG---ATCAAAGAGATTCAGGGAATTGGTTGCTT 1519
||||| || |||||||||||| |||||| |||| ||||||||||||||||||||||||
Sbjct 1794 TTGAG-GAGGAACCTTCAACCGCTGAGGACCATCAGAGAGATTCAGGGAATTGGTTGCTT 1852
Query 1520 GTGCTGGAAGAAACCGCTACGCAGGTGCAGGATAATAACTCGATGGCGATAGTACCGTTC 1579
| | | |||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1853 GCGTTAGAAGAAACTGCTACGCAGGTGCAGGGTAATAACTCGATGGCGATAGTACCGTTC 1912
Query 1580 GGGTTAGATGATCCGATGCCTGCGTTTCAAGCCGCCATGGACCAATACAATCCATTCTTG 1639
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1913 GGGTTAGATGATCCGATGCCTGCGTTTCAAGCCGCCACGGACCAATACAACCCATTCTTG 1972
Query 1640 GAAGAACCAGTTGCAG-AGTTAGCTGCAGCCG-AGGAACCAATGACCACGTTCAGTGTCT 1697
|||||||||||||| | |||||||| |||||| || ||||||||| ||||||| ||| ||
Sbjct 1973 GAAGAACCAGTTGC-GCAGTTAGCTACAGCCGGAG-AACCAATGATCACGTTCGGTGGCT 2030
Query 1698 TGGCTTTGACAGAGTTTCAGCCAGAACCGACGTTTCAGGTGAACGTTCCTGAAGATTTTG 1757
|||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2031 TGGCTTTGACAGGGTTTCAGCCAGAACCGACATTTCAGGTGAACGTTCCTGATGATTTTG 2090
Query 1758 AGCCGTCTTCTACACCAACGTTTAAGGCCACGGGGACTTTGCCTGTGGAATGTGACCCAT 1817
||||||||||||||||||| ||||||||||||| |||||||||| || |||||||||| |
Sbjct 2091 AGCCGTCTTCTACACCAACATTTAAGGCCACGGAGACTTTGCCTATGAAATGTGACCCGT 2150
Query 1818 TTACAACATTTGAGAGTACTTTTGGGTTCGGAGAGACATTATCAGAAAATGGAGGGGTAA 1877
||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2151 TTACAACATTTGAGAGT--TTT-GGGTTCGGAGAGACATTTTCAGAAAATGGAGGGGTAA 2207
Query 1878 GTCAACAATCTGTGTTGCAAGAACAGCAGTTATGGTTGCAGAACCAGAAAAAGATCATAG 1937
||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2208 ATCAGCAATCTGTATTGCAAGAACAGCAGATATGGTTGCAGAACCAGAAAAAGATCATAG 2267
Query 1938 CCAAGCACTTGAGTTGATaaaaaaaTTATTTGGCTAG 1974
||||||||||||||||||| |||| ||||||||||||
Sbjct 2268 CCAAGCACTTGAGTTGATACAAAATTTATTTGGCTAG 2304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97790661660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5