BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919199
Length=271
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05065.1 | Symbols: CLE20 | CLAVATA3/ESR-RELATED 20 | chr1:1... 339 1e-92
> AT1G05065.1 | Symbols: CLE20 | CLAVATA3/ESR-RELATED 20 | chr1:1454969-1455220
REVERSE LENGTH=252
Length=252
Score = 339 bits (183), Expect = 1e-92
Identities = 231/253 (91%), Gaps = 8/253 (3%)
Strand=Plus/Plus
Query 6 ATGAAAAATAAAAATATGAATCCGAGTCGTC---GTCTTCTTTGTCTCATTGTTTTTCTC 62
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1 ATGAAAAATAAAAATATGAATCCGAGTCGTCCTCGTCTTCTCTGTCTCATTGTTTTTCTC 60
Query 63 TTCTTCCTT---GTTCTATCTAAAGCTTCAAGAATCCATGTCGAAAGACAACGCTTCTCC 119
||| || || |||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 61 TTCCTCGTTATTGTTCTATCTAAAGCTTCAAGAATCCACGTCGAAAGACGACGCTTCTCA 120
Query 120 TCCAAACCTTCTGGTGAAGACAGAGAGTTTATCCCTTCTCAACAC-ACTCTTCCGGTCGT 178
|||||||||||||||||| ||||||||||| ||||||| |||| | ||| ||||||||||
Sbjct 121 TCCAAACCTTCTGGTGAAAACAGAGAGTTTCTCCCTTCACAAC-CTACTTTTCCGGTCGT 179
Query 179 CGACGCCGGCGAAATACTACCGGATAAACGGAAGGTAAAGACGGGATCAAACCCTTTGCA 238
||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 CGACGCCGGTGAAATCCTACCGGATAAACGGAAGGTTAAGACGGGATCAAACCCTTTGCA 239
Query 239 CAACAAGCGATGA 251
|||||| ||||||
Sbjct 240 CAACAAACGATGA 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12416134003
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5