BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919203

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G23330.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   246    7e-65


> AT4G23330.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: eukaryotic translation initiation factor 3A (TAIR:AT4G11420.1); 
Has 63 Blast hits to 55 proteins in 14 species: 
Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 
62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 
| chr4:12192115-12195019 FORWARD LENGTH=1108
Length=1108

 Score =  246 bits (133),  Expect = 7e-65
 Identities = 206/239 (86%), Gaps = 13/239 (5%)
 Strand=Plus/Plus

Query  2    ATCGAGTAC--TCACCGGAAAATGGATGCCGAAGCTGAAATTGATGTGGCTCAGCCGGTG  59
            |||||||||  |||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct  1    ATCGAGTACATTCACCGGAAAATGGATGCCGGAGCTGAAATTGATGTGGTTCGGCCGGTG  60

Query  60   GAGGACA-ATTCGTCGGAGGAAACTGGTCCGGAACAAGATCACGGAGG-A-A---GA-CC  112
            |||| || ||||| ||| ||||| | ||||||||||||| |||| ||| | |   || ||
Sbjct  61   GAGG-CAGATTCGGCGGCGGAAATTAGTCCGGAACAAGACCACGAAGGAAGATCGGAGCC  119

Query  113  --AG-AGTTGAAACAAGGAGAGATTTTGAGAACCCTTGCAACGGTTGAGAAGGATTCGCA  169
               |  |||||| ||||| |||||||| | ||| ||||| ||||| ||||||||||||||
Sbjct  120  TTCGTCGTTGAACCAAGGGGAGATTTTAAAAACACTTGCTACGGTGGAGAAGGATTCGCA  179

Query  170  GGCAATCGCGGAAAGCTTTTCGTCTCTCTTTGTTTCCCTCCGATCAACTCTCTCTGAGG  228
            |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  180  GGCAATCGCGGAGAGCTTTTCGTCTCTCTTTGTTTCCCTCCGATCAACTCTTTCTGAGG  238



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13371221234


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5