BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919223
Length=1429
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05280.1 | Symbols: | Protein of unknown function (DUF604) ... 1997 0.0
> AT1G05280.1 | Symbols: | Protein of unknown function (DUF604)
| chr1:1535444-1537525 REVERSE LENGTH=1497
Length=1497
Score = 1997 bits (1081), Expect = 0.0
Identities = 1268/1360 (93%), Gaps = 5/1360 (0%)
Strand=Plus/Plus
Query 21 ATGTGTCTTCCATTTAGACCCGTCTCGAAAACCTATTCTTCCTCTTCTTCTTCTTCGACT 80
||||||||||||||| |||||||||||||||| |||| | || |||||||||||||||
Sbjct 112 ATGTGTCTTCCATTTCGACCCGTCTCGAAAACATATT-AT--TCGTCTTCTTCTTCGACT 168
Query 81 ATCGCGACGCGTATGATAAATTGCATACTAATTTTTGTATTCATTTTCTTGGTCTACCTC 140
|||| |||||||||| |||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct 169 ATCGTGACGCGTATGGTAAACTGCATACTACTTTTTGTATTCATTTTGTTGGTCTACCTC 228
Query 141 CTCATCTCGGCCTCAAGGCTTCAATCTAAAGACTCTATTCATGCCTACTTCTCATCTTCT 200
||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||
Sbjct 229 CTCATCTCGGCCTCAAGACTTCAATCTAAAAACTCTATTCATGCATACTTCTCATCTTCT 288
Query 201 GATCAAGATCAATCTCAGATCCCAACAAAAATCGAGCACGTCGTATTTGGGATAGGCTCA 260
||||||||||||||||||| ||| ||||||||||||||| |||| |||||||||||||||
Sbjct 289 GATCAAGATCAATCTCAGAGCCCGACAAAAATCGAGCACATCGTCTTTGGGATAGGCTCA 348
Query 261 AGCACGAACTCGTGGGGTGCACGTAGAGAATACGTTAAGCTTTGGTGGGATGCTCAGAAA 320
||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 AGCGCGATCTCGTGGCGTGCACGTAGAGAATACGTTAAGCTTTGGTGGGATGCTCAGAAA 408
Query 321 ATGAGAGGCTGCGTCTTTGTTGAGCGTCCCTTTCCGTCTTCGGAAAACCACACAGATTCA 380
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 409 ATGAGAGGCTGCGTCTTTGTTGAGCGTCCCTTGCCGTCTTCTCAAAACCACACAGATTCA 468
Query 381 AATCTCCTTCCTCCGGTTTGTGTTTCCCAAGATACTTCCCGGTTCAGGTACACTTGGAGA 440
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TATCTCCTTCCTCCGGTTTGTGTTTCCCAAGATACTTCCCGGTTCAGGTACACTTGGAGA 528
Query 441 GACGGTGACAGAAACGCGATCCGAATAGCCCGGTGCGTTCTAGAAACCGTCAGACTATTC 500
| |||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||
Sbjct 529 GGCGGTGACAGAAACGCGATCCGAATCGCGCGGTGCGTTCTAGAAACTGTCAGGCTATTC 588
Query 501 AATACCTCCTCAAAAGAAGTAAGGTGGTACGTATTTGGAGACGACGACACGATTTTTATA 560
|| ||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 589 AACACCTCCTCAGAAGAAGTAAGATGGTACGTATTTGGAGACGACGACACGATTTTCATT 648
Query 561 CCTGAAAATCTCGCTCGAACTCTCTCCAAATACGACCACACATCATGGTATTACATAGGA 620
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 CCTGAAAACCTCGCTCGAACTCTCTCCAAATACGACCACACATCATGGTATTACATAGGA 708
Query 621 TCAACCTCAGAGATTTATCACCAGAATTCAATGTTTGGACACAACATGGCGTTTGGCGGT 680
|||||||| ||||||||||||||||| || ||||| |||||| |||||||||| || |||
Sbjct 709 TCAACCTCGGAGATTTATCACCAGAACTCTATGTTCGGACACGACATGGCGTTCGGGGGT 768
Query 681 GGAGGGTTCGCTTTAAGCAGCTCATTGGCTAATGTTTTAGCTAGAAATTTCGATTCTTGT 740
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GGTGGGTACGCTTTAAGCAGCTCATTGGCTAATGTTTTAGCTAGAAATTTCGATTCTTGT 828
Query 741 ATCGAACGGTATCCACATTTGTACGGAGGAGACTCTAGGGTTCATGTTTGTGTGCTTGAG 800
|||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 829 ATCGAACGATATCCACATTTGTACGGAGGAGACTCTAGGGTTTATGCTTGTGTGCTTGAG 888
Query 801 CTCGGAGTTGGATTGTCTAAAGAACCTGGCTTCCATCAGTTTGATGTGAGAGGAAATGCA 860
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 889 CTTGGGGTTGGATTGTCTAAAGAGCCTGGCTTCCATCAGTTTGATGTGAGAGGAAATGCA 948
Query 861 TTGGGAATATTGACATCACATTCAATGAGACCGTTGGTGTCACTACACCACCTGGCTCAC 920
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 949 TTGGGAATATTGACATCACATTCAACGAGACCGTTGGTGTCACTACACCACATGGCTCAC 1008
Query 921 ATTGACCCAATCTTTCCAAACTCAACCACTTTCTCCGCCGTCCACCACCTCTTCTCAGCC 980
|||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| |||
Sbjct 1009 ATTGACCCAATCTTTCCAAACTCAACCACTTTCTCCGCGGTCCGCCACCTTTTCTCCGCC 1068
Query 981 GTAGAACTTGACCCTCTCCGTATATTTCAGCTCTCCATTTGCTACGACCGTTGGTACTCT 1040
||| |||| |||||||||||||| ||||| || ||| |||||||||||||||||||||||
Sbjct 1069 GTACAACTCGACCCTCTCCGTATTTTTCAACTATCCGTTTGCTACGACCGTTGGTACTCT 1128
Query 1041 TGGACTATCTCCGTCTCTTGGGGATATACTGTTCAGATTGATAGTAGGCATTTGTTTCTA 1100
||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1129 TGGACCATCTCCGTCTCTTGGGGATATACTGTTCAGATTGATGGCAGGCATTTGTTTCTA 1188
Query 1101 CCGGATGTTTTGCGGACACAAGAGACGTTTCAACCGTGGCAAGATTCCGGCGGATTGGCA 1160
| ||||||||||||| ||||||||||||| | ||| |||||| | || |||||||| |||
Sbjct 1189 CGGGATGTTTTGCGGGCACAAGAGACGTTCCGACCATGGCAAAAATCAGGCGGATTAGCA 1248
Query 1161 AGTGTTTACATGTTCAACACAAGAGAGATTCATCCTGATCCTTGCCAACGACCTGTCACT 1220
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1249 AGTGTTTACACATTCAACACAAGAGAGATTCATCGTGATCCTTGCCAACGACCTGTCACT 1308
Query 1221 TTCTACATGCAACATGTTTCTTATAGTAGCCATAATGGAACCATTAAAAGTGTTTATAAG 1280
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1309 TTCTACATGCAACATGTTTCTTCTAGTAGCCATGATGGAACCATTAAAAGTGTTTATAAG 1368
Query 1281 CAGGCTTATGAGAATTGTACATACGATCCCATTACATCGCCTCGCAAAAT-CAAAGAGAT 1339
|| ||||| |||||||| || |||||||| ||||||||||||||||||| || |||||
Sbjct 1369 CAAGCTTACGAGAATTGCACCTACGATCCTGTTACATCGCCTCGCAAAATTCAT-GAGAT 1427
Query 1340 TAGAGTGTTTTCAAGAAGACTCGATCCCAACATCAAACAA 1379
|||||||||||||||||||||||||||||| |||| ||||
Sbjct 1428 TAGAGTGTTTTCAAGAAGACTCGATCCCAATATCAGACAA 1467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70431364635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5