BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919230
Length=445
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05330.1 | Symbols: | unknown protein; Has 6 Blast hits to ... 566 8e-161
> AT1G05330.1 | Symbols: | unknown protein; Has 6 Blast hits to
6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:1558170-1558583 FORWARD LENGTH=414
Length=414
Score = 566 bits (306), Expect = 8e-161
Identities = 372/404 (92%), Gaps = 3/404 (1%)
Strand=Plus/Plus
Query 21 ATGGCTGAT--C-ATAACACTCCTCCCTATGACCTAACGAAACTCGACCATTACATCAAA 77
||||||||| | | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGATCACAACAACACTCCTCCCTTTGACCTAACGAAACTCGACCATTACATCAAA 60
Query 78 TACCAACCACCAGAAGAAGCTGAAGAtttttttGTCCATGTCGAGGTCAAGGTTCTCGGA 137
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TACCAACCACGAGAAGAAGCTGAAGATTTTTTTGTTCATGTCGAGGTCAAGGTTCTCGGA 120
Query 138 AAAGGATCTTCTCCATTAGAGATCTTCTTATCAACCTCGGTCCATGATTTCATCTGGGAA 197
|||||||||||||| |||||||||| ||| ||||| |||||| |||| ||| ||||||||
Sbjct 121 AAAGGATCTTCTCCGTTAGAGATCTCCTTCTCAACTTCGGTCTATGAATTCGTCTGGGAA 180
Query 198 GACGAAGATTGTTATGAGAAAGCAGAACTCTACGAATTCTTTGTCGAGGATGCTGGAATA 257
|||||||||||||||||| || |||||||||||||||||| ||||||||||||||||
Sbjct 181 GACGAAGATTGTTATGAGTTAGTTGAACTCTACGAATTCTTTACCGAGGATGCTGGAATA 240
Query 258 GATTCATACGAGGCTCAGTTCTTGGTCAATGACTTGATTTTGTACGTTAATAAGGTGACA 317
||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 GATGCATTCGAGGCTCAGTTCTTGGTCAATGACTTGATTTTGTACGTTAATAAGACGACA 300
Query 318 CGACCGCTTGACGAGGACTTCACAGGAGTTTTCAAGTTGATGGCCGAAGTTACGGTAAAA 377
||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 301 CGACCGCTTGATGAGGACTTCACTGGAGTTTTCAAGTTGATGGCCGAAGTTACGTTAAAA 360
Query 378 CCGGTCGACCTTAACCATGCCGGTTCAGATCAAACCGAATCCCA 421
|||||| | |||||||||||||||||| | |||||||||||||
Sbjct 361 CCGGTCCAGCTTAACCATGCCGGTTCACAGAAAACCGAATCCCA 404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21162722329
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5