BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919234
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05360.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 2069 0.0
> AT1G05360.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: SNARE associated Golgi protein family (TAIR:AT4G14950.1);
Has 332 Blast hits to 326 proteins in 115 species: Archae
- 0; Bacteria - 11; Metazoa - 174; Fungi - 0; Plants -
74; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
| chr1:1564598-1567465 FORWARD LENGTH=1656
Length=1656
Score = 2069 bits (1120), Expect = 0.0
Identities = 1227/1280 (96%), Gaps = 2/1280 (0%)
Strand=Plus/Plus
Query 13 AAAGAGAGATGGGTTCTGGAAATCGAGCTTCTTCTAAAACTCCTCCGATCTCAGGTTTGC 72
||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 211 AAAGAGATATGGGTTATGGAAATCGAGCTTCTTCTAAAACTCCTGCGATCTCAGGTTTGC 270
Query 73 GTGAAAAGCATCAACAGGATCTAGAAAAACTAACATTGACCTCACAGCCATTCAAAACCT 132
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 271 GTGAAAAGCATCAACAGGATCTTGAAAAACTGACATTGACCTCACAACCATTCAAAACCT 330
Query 133 TGAGATTCTTCGTTGTTGCTGTTTTGCTATATGTTAGAAGATGGTCCTCCTACCTTCTTG 192
||||||| || |||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 331 TGAGATTATTTGTTGTTGCTGTTTTTCTCTATGTTAGAAGATGGTCCTCTTACCTTCTTG 390
Query 193 CAAATGTTGGCTGGCTTATGCTTTTTGGCAGCATTTTTGTTGCCTTTGCAGCTCTTCTTG 252
||||||||||||||||||| |||||| | |||||||||||||| ||||||||||||||||
Sbjct 391 CAAATGTTGGCTGGCTTATACTTTTTTGTAGCATTTTTGTTGCATTTGCAGCTCTTCTTG 450
Query 253 TGACCCTAGATGGCCCTCACGTCAAGCACCTTGAAGAACTGTCTGAGTACACCAGGTTTG 312
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 451 TGACCCTAGATGGGCCTCACGTCAAGCATGTTGAAGAACTGTCTGAGTACACCAGGTTTG 510
Query 313 GACTATGGTGGATATTTTTAGGTGTTGCATCATCAATTGGCCTTGGATCTGGTTTGCATA 372
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 511 GACTATGGTGGATATTCTTAGGTGTTGCATCATCAATTGGTCTTGGATCTGGTTTGCATA 570
Query 373 CATTTGTTCTTTATTTGGGTCCCCATATTGCTTTGTTTACCATAAAAGCAATGCAGTGCG 432
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 571 CATTTGTTCTTTATTTGGGTCCCCATATTGCTTTATTTACCATAAAAGTAATGCAGTGCG 630
Query 433 GGCGAGTCGATTTAAAAAGTGCTATATATGATACAATTCAGTTGAAGAGAAGTCCTTCAT 492
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 631 GGCGAGTCGATTTAAAGAGTGCTATATATGATACAATTCAGTTGAAGAGAAGCCCTTCAT 690
Query 493 GGCTTGATAAACCTTGCCACGAGTTTGGCTCCCCAGTCTTTTCTTCAGGAGTTCCTCTTA 552
||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 691 GGCTTGATAAACCATGCCACGAGTTTGGCTCCCCAGTTTTTTCTTCTGGAGTTCCTCTTA 750
Query 553 GCAGCATACTGCCTCAGGTTCAGATAGAAGCCATCCTCTGGGGTCTCGGAACAGCGTTGG 612
|||| ||||| || ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 751 GCAGTATACTACCACAGGTTCAGATAGAAGCCATCCTATGGGGTCTAGGAACAGCGTTGG 810
Query 613 GAGAACTTCCTCCTTACTTTATCTCCAGAGCAGCAAGTCTTTCGGGTGGCAAAATGGAAG 672
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 811 GAGAACTTCCTCCTTACTTTATCTCCAGAGCAGCAAGTCTTTCCGGTGGCAAAATGAAAG 870
Query 673 AACTGGAGACATGTTCTGGTGACGATAACGGATTCATTGCTAAACGCGTAAATCAGATCA 732
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 AATTGGAGACATGTTCTGGTGACGATAACGGATTCATTGCTAAACGCGTAAATCAGATCA 930
Query 733 AAGGCTGGTTATTGTCACATTCACAATACCTCAACTTCTTCACAATTCTGATTCTTGCTT 792
|| ||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 931 AAAGCTGGTTATTGTCGCATTCACAATATCTCAACTTCTTCACAATCCTGATTCTTGCTT 990
Query 793 CGGTTCCTAACCCATTATTTGACCTTGCTGGAATCATGTGTGGACAATTCGAGAAACCGT 852
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 991 CGGTTCCTAACCCATTATTCGACCTTGCTGGAATCATGTGTGGACAATTCGAGAAACCGT 1050
Query 853 TTTGGGAGTTTTTCCTTGCAACCTTGATTGGAAAGGCAATCATCAAGACACATATACAGA 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 TTTGGGAGTTTTTCCTTGCAACCTTGATTGGAAAGGCAATCATCAAGACACATATACAGA 1110
Query 913 CGGTTTTCATCATATGTGTCTGTAATAATCAGCTTCTTGACTGGGTAGAGAATGAGCTGA 972
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CGGTTTTCATCATATGCGTCTGTAATAATCAGCTTCTTGACTGGGTAGAGAATGAGCTGA 1170
Query 973 TATATATAT-TGAGCTTTGTTCCCGGTTTTGCTTCTGCATTGCCTGAGCTCACAGCAAAA 1031
||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1171 TATATAT-TCTGAGCTTTGTGCCCGGTTTTGCTTCTGCATTGCCTGAGCTCACAGCGAAA 1229
Query 1032 CTCCGCTTAATGAAAGAGAAGTACTTGGTTGCTTCGCCTCCAGTATCTTCTGATATCAAT 1091
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1230 CTCCGCTTAATGAAAGAGAAGTACTTGATTGCTTCGCCTCCAGTATCTTCTGATATCAAT 1289
Query 1092 GTCAAGAAATGGGATCTTTCTTTTGCATCAGTGTGGAATGGAGTCGTGTGGCTGATGCTT 1151
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1290 GTCAAGAAATGGGATCTTTCTTTTGCATCCGTGTGGAACGGAGTCGTGTGGCTGATGCTT 1349
Query 1152 TTAAATTTCTTCGGCCAGATTGTGACTTCAACTGCACAGAGATACCTAAAGAAGCAACAA 1211
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 TTGAATTTCTTCGGCCAGATTGTGACTTCAACTGCACAGAGATACCTAAAGAAGCAACAA 1409
Query 1212 GAAGAAGAACTAGATGCCTTAACCAACAAGTCGTCGCTGAGCTCAAAGAGATCTAAGTAG 1271
|||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||
Sbjct 1410 GAAGAAGAACTAGATGCCTTGACCAACAAGTCGTCGCTGACCTCAAAGAAATCTAAGTAG 1469
Query 1272 TCCAGAAATTTATTTCTCTT 1291
||||||||||||||| ||||
Sbjct 1470 TCCAGAAATTTATTTATCTT 1489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63503689425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5