BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919235
Length=1396
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05370.1 | Symbols: | Sec14p-like phosphatidylinositol tran... 1074 0.0
AT3G22410.1 | Symbols: | Sec14p-like phosphatidylinositol tran... 60.2 5e-08
> AT1G05370.1 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr1:1569192-1572280 REVERSE LENGTH=1480
Length=1480
Score = 1074 bits (581), Expect = 0.0
Identities = 642/672 (96%), Gaps = 2/672 (0%)
Strand=Plus/Plus
Query 708 GGTATTCGCACATTCGTGGATCTATCAACGGCCACGATGATCGTATCAATGCAAGATTTT 767
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 586 GGTATTCGCACATTCGTGGATCTATCAACGGCTACGATGATTGTATCAATGCAAGATTTT 645
Query 768 CAAGACTCGTTTGACTACGACGACTTCTCTTCGTCTTACCCATCACGAGTCTCCTCCCTA 827
||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||
Sbjct 646 CAAGACTCGTTTGACTACGACGATTTCTCGTCATCATACCCATCACGAGTCTCCTCCCTA 705
Query 828 CGATTCGACACGTCATCACTCAAATCAACGGACAAGATCGGTTCTTGTGCATCCTCTAGG 887
|||||||||||||||||||| |||||||||||||||||||| || || ||||||||||||
Sbjct 706 CGATTCGACACGTCATCACTAAAATCAACGGACAAGATCGGCTCATGCGCATCCTCTAGG 765
Query 888 TTCGCTTTCACCGTATCTCGCGACGGTCTCGACACTA-TCAAACCATGGTGTCTTACGTT 946
|||||||||||||||||||||||||| |||||||| | |||||||||||||||| |||||
Sbjct 766 TTCGCTTTCACCGTATCTCGCGACGGACTCGACAC-AGTCAAACCATGGTGTCTCACGTT 824
Query 947 GACTGACACGTCATCATCCAAACTAGGACACAACACAGGCGCGTATATCTCACCGCTAAA 1006
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 825 GACTGACACGTCATCAACCAAACTAGGACACAACACAGGCGCGTACATCTCACCGCTTAA 884
Query 1007 CGCGCGTTCTTTCTCTTTCGCGTCACCGGCGGCAAGAAGCGAGCCATTCGGTGGTCCAAG 1066
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 885 CGCGCGTTCTTTCTCTTTCGCGTCACCGGCGGCTAGAAGCGAGCCATTCGGTGGTCCAAG 944
Query 1067 GAGGAGTTTCTTTGCTTCCACTCCGATGCCAGCTAGGACCACCGACCGTCACTCTATCGG 1126
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 GAGGAGCTTCTTCGCTTCCACTCCGATGCCAGCTAGGACCACCGACCGTCACTCTATCGG 1004
Query 1127 AACCCTCCGTGACCCGCGGATACCTCGCCCGTCTTTCTTCCAATCTCCGGCGGTTTTCTT 1186
|||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1005 AACCCTACGGGACCCGCGGATACCTCGCCCGTCTTTCTTCCAATCTCCGGCGATTTTCTT 1064
Query 1187 CAGGCGAGAGTCACACGTCAGCAAAAGTGAGAAGCCACGAGATTCGTTCGTTCAGTTTCT 1246
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1065 CCGGCGAGAGTCACACGTCAGCAAAAGTGAGAAACCACGAGATTCGTTCGTTCAGTTTCT 1124
Query 1247 CAAGTTCTATCGTAGACCGTACGATGAGATGACTTATAGGTCAAAGATGCGGCCACCGCT 1306
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1125 CAAGTTTTATCGTAGACCGTACGATGAGATGACTTATAGGTCAAAGATGAGGCCACCGCT 1184
Query 1307 CGGTGGTCTTGTCTCCATTGTTTCAACTCAGATTAGACGCCGCCACGTGTCTTTATCTCA 1366
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1185 CGGTGGTCTTGTATCCATTGTTTCAACTCAGATTAGACGCCGTCACGTGTCTTTATCCCA 1244
Query 1367 ACGGTTCTAACT 1378
||||||||||||
Sbjct 1245 ACGGTTCTAACT 1256
Score = 795 bits (430), Expect = 0.0
Identities = 444/451 (98%), Gaps = 0/451 (0%)
Strand=Plus/Plus
Query 24 ATGGGAAAGAAAGAGCAGAAGGATCATCATTCAACAGTAGAGAGCGACGACAAGGTCGAA 83
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1 ATGGGAAAGAAAGAGCAGAAGGATCATCATTCAGTAGTAGAGAGCGACGACAAAGTCGAA 60
Query 84 GCTGTTCTTCATCTCCTTCGTAAACATTCTCCTCTAACTCTTAAACAGGAGAAGTTCTGT 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTGTTCTTCATCTCCTTCGTAAACATTCTCCTCTAACTCTTAAACAGGAGAAGTTCTGT 120
Query 144 AACAGAGCTTGTGTCGGTAGATTCTTGAGAATAAAAGGAGACAATGTGAAGAAAGCAGCT 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACAGAGCTTGTGTCGGTAGATTCTTGAGAATAAAAGGAGACAATGTGAAGAAAGCAGCT 180
Query 204 AAACAGTTAAGGTCTTGCCTTTCATGGAGATCTTCTCTTGGCATTGAGAGCTTGATCGCC 263
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 AAACAGTTAAGGTCTTGCCTTTCATGGAGATCTTCTCTTGGCATTGAGAGTTTGATCGCC 240
Query 264 GACGAGTTCACGGCGGAGCTTGCTGAAGGTCTTGCCTACGTCGCTGGTCTTGACGACGAG 323
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATGAGTTCACGGCGGAGCTTGCTGAAGGTCTTGCCTACGTCGCTGGTCTTGACGACGAG 300
Query 324 TGTAGACCCGTTTTGGTTTTCCGCATTAAACAAGATTATCAGAAGCTACATACGCAGAAA 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGTAGACCCGTTTTGGTTTTCCGCATTAAACAAGATTATCAGAAGCTACATACGCAGAAA 360
Query 384 CAGTTGACTCGTTTGGTGGTATTTACATTAGAGGTTGCAATCTCAACCATGTCCAGAAAC 443
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 CAGTTGACACGTTTGGTGGTATTTACATTAGAGGTTGCTATCTCAACCATGTCCAGAAAC 420
Query 444 GTCGAACAATTTGTCATCCTTTTCGATGCTA 474
|||||||||||||||||||||||||||||||
Sbjct 421 GTCGAACAATTTGTCATCCTTTTCGATGCTA 451
Score = 106 bits (57), Expect = 7e-22
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 649 GCTTCTTCAAATCAGCATCAGCTTTCATGAACATACTTGTGACTACACTTAAAATAGTCG 708
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 452 GCTTCTTCAAATCAGCATCAGCTTTCATGAACATACTTGTGACTACACTCAAAATAGTCG 511
> AT3G22410.1 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr3:7933167-7935808 REVERSE LENGTH=1508
Length=1508
Score = 60.2 bits (32), Expect = 5e-08
Identities = 123/165 (75%), Gaps = 13/165 (8%)
Strand=Plus/Plus
Query 1215 GAGAAGCCACGAGATTCGTTCGTTCAGTTTCTCAAGTTCTATCGTAGACCGTACGATGAG 1274
|||||| |||| || |||| || | || ||| ||||| || || |||||||||||||||
Sbjct 1189 GAGAAGTCACGTGAAGCGTTTGTACCGTATCTGAAGTTTTACCGGAGACCGTACGATGAG 1248
Query 1275 A-TGACTTATAGGTCAAAG--ATGCGG-CCACCGCTCGGTGGTCTTGTCTCCATTGTTTC 1330
| || | |||||||| ||| | | || ||| || | | | | || | || | || ||
Sbjct 1249 ACTG-CGTATAGGTCTAAGTTACGTGGTCCA-CG-T--G-GAT-TTCTGTCGGTCGTGTC 1301
Query 1331 AACTCAGATTAGACGC-CGCCACGTGTCTTTATCTCAACGGTTCT 1374
|||| | ||| | ||||||||||||||||||||||||||||
Sbjct 1302 TTCTCACAGAAGA-TCTCGCCACGTGTCTTTATCTCAACGGTTCT 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68774746650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5