BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919239
Length=734
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05420.1 | Symbols: ATOFP12, OFP12 | ovate family protein 12... 1020 0.0
> AT1G05420.1 | Symbols: ATOFP12, OFP12 | ovate family protein
12 | chr1:1590073-1590753 FORWARD LENGTH=681
Length=681
Score = 1020 bits (552), Expect = 0.0
Identities = 650/695 (94%), Gaps = 16/695 (2%)
Strand=Plus/Plus
Query 21 ATGCCAAGAGTCATGTGGAAAAACTTCCATCTTTGCTTCCCATCAAATCTCACCACGCCC 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATGCCAAGAGTCATGTGGAAAAACTTCCATCTTTGCTTCCCATCAAATCTCACCAAGCCC 60
Query 81 TCTTCATCTCCGTCCGATGCCACCTCCGACGATCCCAACCGTCCATCCATTCTTCTCATC 140
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTCATCTCCGTCCGGTGCCACCTCCGACGATCCCAACCGTCCATCCATTCTTCTCATC 120
Query 141 AACAACTTCAACCTCCTCTACGACGACTCCTCCGCCGCCCACCGCCGCCGCCTATCCAAG 200
|||||||| |||||||| || |||||||||||||||||||||||||||| ||||||||
Sbjct 121 AACAACTTTAACCTCCTATATGACGACTCCTCCGCCGCCCACCGCCGCC---TATCCAAG 177
Query 201 CCTCTCATCGACGACGTTGAACCCTCTTTCACCTTCACCGCCTCCACCTCCACCGCAGCT 260
||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 178 CCTCTTATCCACGACGTTGAACCCTCTTCCACCTTCACCGCCTCCACCTCCACCGCAGCT 237
Query 261 AACTCTTCTTCCTCTTCTGCCTCCTACGATGACTCCGATAATTACGGTTTTCCCCCTGAC 320
|||||||||||||| |||||||| || ||||| |||||||||||||||||| ||||||||
Sbjct 238 AACTCTTCTTCCTCCTCTGCCTCTTATGATGATTCCGATAATTACGGTTTTGCCCCTGAC 297
Query 321 GACGACTCTGCCCCTCCTGACTTAACCGCCGTTTTAGCCTCCCGTCGCTTCTTCTTCTCT 380
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 298 GACGACTCTCCCCCTCCTGACTTAACCGCCGTTTTAGCCTCCCGCCGCTTCTTCTTCTCT 357
Query 381 TCTCCTGG-TCGCTCCAACTCAATCACTGACTCGCCGGATCTCCGCTGCCAGGATAATTA 439
|||||||| | |||| |||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 358 TCTCCTGGCT-GCTCAAACTCAATCACTGACTCGCCAGATCTCCGCTGCCGGGATAATTA 416
Query 440 CGATACTGCCACTACTACCACTAGGCTTCTCACCGGAGGAACAGCCGTGAAACAAC-ACG 498
|||||||||||||| ||||||| ||||||||||| ||||||||||| | |||
Sbjct 417 CGATACTGCCACTA---------GGCTTCTTACCGGAGGAACCGCCGTGAAACA-CTACG 466
Query 499 TGCAATCTCCTGATCCTTACAACGACTTCCGGCGATCAATGCAGGAGATGCTCGACGCCG 558
|||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||
Sbjct 467 TGCAATCTCCTGATCCGTACAACGACTTCCGACGATCAATGCAGGAGATGATCGACGCCG 526
Query 559 TTACAAACGCCGGAGATCTTCGCCGTTACGAGTTCTTGCACGAGCTGTTACTCAGTTACC 618
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 527 TTACAAACGCCGGAGATCTTCGCCGTTACGAGTTCTTGCATGAGCTGTTACTCAGTTACC 586
Query 619 TCTCTTTGAATGCCGCCGATACACACAAGTTCATTATCAGAGCCTTCGCCGACATTCTCC 678
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 587 TCTCTTTAAATGCCGCCGATACACACAAGTTCATTATCAGAGCTTTCGCCGACATTCTCG 646
Query 679 TCTCTCTCTTATCGGACGGTCATCGGATCAGCTGA 713
|||||||| ||||||||||||| ||||||||||||
Sbjct 647 TCTCTCTCCTATCGGACGGTCACCGGATCAGCTGA 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35616010223
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5