BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919242
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05440.1 | Symbols: | C-8 sterol isomerases | chr1:1596007-... 1572 0.0
> AT1G05440.1 | Symbols: | C-8 sterol isomerases | chr1:1596007-1597848
REVERSE LENGTH=1527
Length=1527
Score = 1572 bits (851), Expect = 0.0
Identities = 1078/1185 (91%), Gaps = 25/1185 (2%)
Strand=Plus/Plus
Query 1 AGATGATAAACAAAGAAACCATGAAAGGAAAGATATTAGTTTCACCGTCGGAG------A 54
|||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
Sbjct 4 AGATGATAAACAGAGAAACCATGAAAGGAAAGATTTTAGTTTCACCGTCGGAGAAATCAA 63
Query 55 --A-ATCGAGCACAACAACAACGACGACTACTACAACTACTGTATCTACGGAAGATTCGG 111
| |||||||||||||||||| ||||| ||||| || ||||||||||||||||||| ||
Sbjct 64 TGACATCGAGCACAACAACAACAACGACGACTACTACAACTGTATCTACGGAAGATTGGG 123
Query 112 AGAAAAGAGACAGTAATTGTTACTTCCCAGATTGTCGTAAAGATGCGAATTGCAGTTGCG 171
||| ||||||||||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 124 AGAGAAGAGACAGTAATTGTTACTTCCCAGACTGTCGTAAAGATGCGAATTGTAGCTGCG 183
Query 172 AGATTTGTCTTGACAGTCTCAACGCAACGCTTGATCTCATGCCTCTCAGTGTACAAAAAA 231
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 184 AGATTTGTCTTGATAGTCTCAACGCTACGCTTGATCTCATGCCTCTCAGTGTTCAAAAAA 243
Query 232 GCTCTCTCACTAAGCTTTCTTTTGCCTCCAATTTCAAATCCACCGTTGAATCTACTCCGA 291
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 244 GCTCTCTCACTAAGCTTTCTTCTGCATCCAATTTCAAATCCACCGTTGAATCTACTCCGA 303
Query 292 CTTCGTTTGATCCGACGGTGGTCACCACACCC-GCTTCTGTTTCTCGCCCAATCTTGAAG 350
||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 304 CTTCGTTTGATCCAACGGTGGTCACCAC-CCCTGCTTCTGTTTCTCGCCCAATCTTGAAG 362
Query 351 TTGATGATCTCTTCGCCGAAGAAGAAGCAAATTAAGAAAGCAAAAGTTTCCGAGAATGAA 410
|||||||||||||| ||||||||||| | | |||||| ||||||||| ||||||||||
Sbjct 363 TTGATGATCTCTTCCCCGAAGAAGAAACTGACCAAGAAATCAAAAGTTTTCGAGAATGAA 422
Query 411 GAACAGAGGAAAACGACGAAGAAAGAAAGAAGCCTACTGATTCTCGTTGTTCTGAAACT- 469
|||||||||||||||||||||||||| ||||| ||||||||| | ||| |||||||| |
Sbjct 423 GAACAGAGGAAAACGACGAAGAAAGAGAGAAGACTACTGATTGTTGTTTTTCTGAAAGTG 482
Query 470 AGTTTTGGTGATTGGGTTGGTTCTGTGTTCGGAGTTAGGGTTTAGTTGGGTGTTTAAAG- 528
| ||||||||||||||||||||||| ||| ||| |||||||||||||||||| || |||
Sbjct 483 A-TTTTGGTGATTGGGTTGGTTCTGGGTTTGGAATTAGGGTTTAGTTGGGTGCTTGAAGA 541
Query 529 GGCTTTTGAAACCTGAATTTACAGAGGAGATAGTGAGGAACG-TTGGTGAGAGAACTCAG 587
|| |||| ||||||||||||||||||||||| |||||||||| || |||||||||||||
Sbjct 542 GGTTTTT-AAACCTGAATTTACAGAGGAGATTGTGAGGAACGCTTA-TGAGAGAACTCAG 599
Query 588 GCTGATCTTGATCTGGGTGTGAAGCTGAGACTCTTGGAAGACGAATTAAAGGGTTTTGTT 647
|||||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 600 GCTGATCTTGATTTGGGGGTGAAGCTGAGACTCTTGGAAGATGAATTTAAGGGTTTTGTT 659
Query 648 AACAA-T-GACAAGTTTTCGAGTTGCGGAGGTTCTGATTCTAAATGGAAAATCATTCAGG 705
| | | | || ||||||||||| ||| |||||||||||||||||||||||||| |||||
Sbjct 660 A-CGAGTAGA-AAGTTTTCGAGATGCACAGGTTCTGATTCTAAATGGAAAATCAATCAGG 717
Query 706 ATGGTCCAATGTTGAACTCAAAGTGTGTTCTGTATAAATCCGCCATTGAAGAGGTGAGGA 765
|||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 718 ATGGACCAATGTTGAACTCAAAGTGTGTTCTGTACAAATCTGCCATTGAAGAGGTGAGTA 777
Query 766 TATGGGGATGGCCTTTGCAGACATCTGGATTGTTCCATACCGGTTTCTCATCAAGTTCGA 825
||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 778 TATGGGGATGGCCTTTGCAGACATCTGGATTGTTCCATACCGGCTTCTCCTCGAGTTCGA 837
Query 826 TCACCGTGTTATCAGGCCGAGTAACCGAGTGGACAGAGGGGAAATTCGGTTACACGATGC 885
||||||||||||||||||||||||| ||||||||||||||||||||||||||| | || |
Sbjct 838 TCACCGTGTTATCAGGCCGAGTAACTGAGTGGACAGAGGGGAAATTCGGTTACTCAATAC 897
Query 886 GCGAGACCAATACTTCATGGAGGAAAACCAAATGGAGCACATCGGTTCTGCAACTAGATC 945
||||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 898 ACGAGACCAACACTTCCTGGGGGAAAACCAAATGGAGCACATCGGTTCTGCAGCTAGATC 957
Query 946 CAAACACATGGGTTCTTGAGTACAGCAAAAGCTCGGTGATAGATGATAGTTCGAGTTTGT 1005
|||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||
Sbjct 958 CAAACACATGGGTTCTTGAGTACAGCCAAAGCTCGGTGATGGATGATAGTTCAAGTTTGT 1017
Query 1006 TGTCACTAACAATGGATCTCATCAAACACATGGTGTTCCGAGCAGCAAAGAATGTAAATC 1065
||||||||||||| ||| |||| ||||| |||||||||||| |||||||||||| ||||
Sbjct 1018 TGTCACTAACAATCGATATCATGGAACACTTGGTGTTCCGAGTAGCAAAGAATGTGAATC 1077
Query 1066 GGGAG-GTTTTCTGGATGTTTTCAGCCTCAGGGA-GTTTGTATAGTGAAGCAGAATCAAA 1123
||||| ||| | |||||||||||| ||||| | | | |||||||| |||||||| |||||
Sbjct 1078 GGGAGCGTTAT-TGGATGTTTTCATCCTCACG-ACGATTGTATAGAGAAGCAGAGTCAAA 1135
Query 1124 GGCTAGCACAATGACACCAACTTAGAAACTTATGAGGaaaaaaaa 1168
||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1136 GGCTAGCGCAATGACACCAACTTAGAAACTTATGAGAAAAAAAAA 1180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57479624025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5