BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919251

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G37670.1 | Symbols:  | Transducin/WD40 repeat-like superfami...   671    0.0  


> AT2G37670.1 | Symbols:  | Transducin/WD40 repeat-like superfamily 
protein | chr2:15797384-15800536 REVERSE LENGTH=2712
Length=2712

 Score =  671 bits (363),  Expect = 0.0
 Identities = 425/455 (93%), Gaps = 3/455 (1%)
 Strand=Plus/Plus

Query  30   ATGGAAGATGGAAACAAATTGGATCGGAAGAAGACAATGACGATGAACTGGGAAGGATTA  89
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAAGATGGAAACAAATTGGATCGGAAGAAGACAATGACGATGAACTGGGAAGGATTA  60

Query  90   GGAGATTTTGAAGATGAAGATGATGATAGATTCTTCGAAACTCATGATCGTCTCTCTTCA  149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  61   GGAGATTTTGAAGATGAAGATGATGATAGATTCTTCGAAACTCATGATCGTCTCTCTTCT  120

Query  150  GCTCTAGCTTTTGACATGTCTGCTGCTTCTTCTTCCGATGAAGATGAAGATTTTGACGAT  209
            ||| || |||| |||||| ||  |||||||||||||||||||||||||||||| ||||||
Sbjct  121  GCTTTAACTTTCGACATGGCTAATGCTTCTTCTTCCGATGAAGATGAAGATTTCGACGAT  180

Query  210  TGTCGTCTCTCGTTTTCCTCCGCCGTTTCTTCCTTAACCACCGCGTCAAGGAAATTGCGT  269
            ||||| ||||||||||| || ||||| ||||||||||||||||| || |||||||| |||
Sbjct  181  TGTCGACTCTCGTTTTCTTCAGCCGTCTCTTCCTTAACCACCGCCTCTAGGAAATTTCGT  240

Query  270  ACGCTGGCGATGTCTCCTGATTACGATATTTGGATGGCTGCTCCGGGATCGATATCTGAG  329
            |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  241  ACGCCGGCGATGTCTCCTGATTACGATATTTGGATGGCTGCTCCGGGATCTATATCTGAG  300

Query  330  CGTCGTCGTCGTCTTCTCCATGGGATGGGACTTGTTAGTAATAAAGATATGGTTAGTGCT  389
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  301  CGTCGTCGTCGTCTTCTCCATGGGATGGGACTTGCTAGTAATAAAGATATGGTTAGTGCT  360

Query  390  GTTTCGATTCGTCGTGTTGTTTCTAACGCGGCTGTTGTTAGTAATGGagaagataagaag  449
            ||||| |||||||| ||||||||||| ||| ||||||||||||| || ||||| ||||||
Sbjct  361  GTTTCCATTCGTCGCGTTGTTTCTAATGCGCCTGTTGTTAGTAACGGTGAAGAAAAGAAG  420

Query  450  atgaagaagaagaTTATGAATGGTGAGGTTGATGA  484
            ||||||||||||||   ||||  ||||||||||||
Sbjct  421  ATGAAGAAGAAGAT---GAATCATGAGGTTGATGA  452



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24664966177


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5