BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919259

Length=323
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G05575.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   424    3e-118


> AT1G05575.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: anaerobic respiration; 
LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; 
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT2G31945.1); 
Has 63 Blast hits to 63 proteins in 10 species: Archae - 
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1661691-1662187 
REVERSE LENGTH=497
Length=497

 Score =  424 bits (229),  Expect = 3e-118
 Identities = 267/285 (94%), Gaps = 4/285 (1%)
 Strand=Plus/Plus

Query  1    TTCTTGCCTGAATGTTTGAAATATCAATGGAAGGAAGCTTTGAAGGCATGTTAATGAAAG  60
            |||||| |||||| ||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct  64   TTCTTGTCTGAATCTTTAAAACATCAATGGAAGGAAGCTTTGAAGGCATGTTAATGAAAG  123

Query  61   TGAGCATTTTTGCTCTGATTCAAGGGCTTGTGTATCTCATACT-ATCTAAATCTTCGAGG  119
            ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| 
Sbjct  124  TGAGCATTTTTGCTCTGATTCAAGGGCTTGTGTATCTCATACTCAGC-AAATCTTCGAGC  182

Query  120  GTTTTCTCTACGTCAAAGACGATGAAGAGAGCTTATAGTTTCCGGTCAGCGAGATCCATC  179
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  183  GTTTTCTCTACGTCAAAGACGATGAAGAGAGCTTACAGTTTCCGGTCAGCGAGATCCATC  242

Query  180  AGCATCCGTAGGATTCTGGCTGTTCTTCAAGATATGCCTGCAGGCGGCGAGATGTCTCCT  239
            || ||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct  243  AGTATCCGCAGGATTCTAGCTGTTCTTCAAGACATGCCAGCAGGCGGCGAGATGTCTCCT  302

Query  240  TCTGCCATGGGACCTTCTCTTGCTTCTCCT-TCATCGTCACCATC  283
            ||||||||||||||||||||||||||| || | ||| ||||||||
Sbjct  303  TCTGCCATGGGACCTTCTCTTGCTTCTTCTCT-ATCCTCACCATC  346



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15030056951


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5