BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919269
Length=1226
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05650.1 | Symbols: | Pectin lyase-like superfamily protein... 1877 0.0
AT1G05660.1 | Symbols: | Pectin lyase-like superfamily protein... 1676 0.0
> AT1G05650.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:1690264-1692126 REVERSE LENGTH=1185
Length=1185
Score = 1877 bits (1016), Expect = 0.0
Identities = 1125/1179 (95%), Gaps = 2/1179 (0%)
Strand=Plus/Plus
Query 22 ATGACAAAACCAGCTATAACATTTCCACTTATCTTCACACTTCTAACCTTCATCGATGTC 81
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGACAAAATCAGCTATAACATTTCCACTTATCTTCACACTTCTCACCTTCATCGATGTC 60
Query 82 TCGAGCAGCGCCTCCATCGTTTTCAACGTCGTGAGCTTCGGGGCCAAACCAGACGGAGTC 141
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGAGCAGCGCCTCCATTGTTTTCAACGTCGTGAGCTTCGGGGCCAAACCAGACGGAGTC 120
Query 142 ACCGATTCCACCGCAGCATTCCTCAAGGCATGGCAAGGGGCTTGTGGCTCGGTATCTTCA 201
||||||||||| ||||||||||| |||||||||||||||||||||||||||| | | |||
Sbjct 121 ACCGATTCCACAGCAGCATTCCTAAAGGCATGGCAAGGGGCTTGTGGCTCGGCAGCATCA 180
Query 202 GCCACGGTGGTGGTCCCCACGGGGACATTTTTGTTGAAGGTAATAACGTTTGGAGGACCA 261
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GCCACGGTGGTGGTCCCCACGGGGACATTTTTGTTGAAGGTAATAACGTTTGGAGGGCCA 240
Query 262 TGCAAGAGCAAAATCACATTTCAAGTGGCCGGAACCATCGTTGCTCCGGAAGATTACAGG 321
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||
Sbjct 241 TGCAAGAGCAAAATCACATTTCAAGTGACCGGAACCGTCGTTGCTCCGGAAGATTATAGG 300
Query 322 ACCTTTGGCAATTCCGGTTACTGGATTCTCTTCAACAAGGTTAACAGATTCTCACTGGTT 381
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACCTTTGGCAATTCCGGTTCCTGGATTCTCTTCAACAAGGTTAACAGATTCTCACTGGTC 360
Query 382 GGTGGGACTTTCGACGCTCGAGCTAATGGGTTCTGGTCTTGCCGGAAATCTGGTCAGAAT 441
||||||||||| |||||||||| || ||||||||||||||||||||||||||| ||||||
Sbjct 361 GGTGGGACTTTTGACGCTCGAGGTAGTGGGTTCTGGTCTTGCCGGAAATCTGGCCAGAAT 420
Query 442 TGTCCTCCCGGTGTTAGGTCAATATCGTTCAACTCGGCAAAAGACGTGATCATAAGTGGA 501
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 TGTCCTCCCGGTGTTAGGTCAATATCGTTCAACTCCGCAAAAGACGTGATCATAAGTGGA 480
Query 502 GTGAAATCCATGAACAGCCAGGTCAGCCATATGACCCTCAACGGTTGCACCAATGTGGTC 561
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 481 GTGAAATCGATGAACAGCCAGGTTAGCCATATGACCCTCAACGGTTGCACCAATGTGGCC 540
Query 562 GTCCGTAACGTCAGGCTGGTGGCTCCCGGAGACAGCCCAAACACTGACGGCTTCACCGTT 621
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTCCGTAACATTAGGCTGGTGGCTCCCGGAGACAGCCCAAACACTGACGGCTTCACCGTT 600
Query 622 CAATTCTCCACTGGAGTCACATTCACCGGAAGCACCGTTCAGACCGGAGACGATTGTGTT 681
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 CAGTTCTCCACTGGAGTCACATTAACCGGAAGCACCGTTCAGACCGGAGACGATTGTGTT 660
Query 682 GCTATCGGTCAGGGGACCCGCAACTTCCTTATTTCCAAGCTTGCTTGTGGCCCAGGTCAC 741
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 GCTATCGGTCAGGGGACCCGCAACTTCCTAATTTCCAAGCTTGCTTGTGGCCCAGGTCAC 720
Query 742 GGGGTTAGCATCGGGAGCTTGGCAAAGCAGTTAAACGAAGACGGAGTAGAGAACGTGACA 801
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGGGTTAGCATCGGGAGTTTGGCAAAGCAGTTAAACGAAGACGGAGTAGAGAACGTGACA 780
Query 802 GTATCGAGTTCGGTATTCACCGGAACACAAAACGGCGTGAGGATAAAGTCATGGGCGAGG 861
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 781 GTATCGAGTTCGGTATTCACCGGATCACAAAACGGCGTGAGGATAAAGTCATGGGCGAGG 840
Query 862 CCGAGTACCGGATTCGTTAGGAACGTCTTCTTCCAAAACCTAATCATGAAGAACGTCCAA 921
|||||||||||||||||||| ||||||||||| ||||| |||||||||| ||||||||||
Sbjct 841 CCGAGTACCGGATTCGTTAGAAACGTCTTCTTTCAAAATCTAATCATGAGGAACGTCCAA 900
Query 922 AACCCTATCATAATCGACCAAAACTACTGTCCCTCCAAGCAAGGTTGCCCTACTGAGCAT 981
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 901 AACCCTATCATAATCGACCAAAACTATTGTCCGTCCAACCAAGGTTGCCCTACTGAGCAT 960
Query 982 TCAGGGGTGAAGATAAGCCAAGTGACCTATAAGAACATACAAGGAACGTCGGCGACACAG 1041
|| ||||||||||||| ||||||||| || ||||||||||||||||| |||||||| |||
Sbjct 961 TCGGGGGTGAAGATAACCCAAGTGACGTACAAGAACATACAAGGAACTTCGGCGACGCAG 1020
Query 1042 CAAGCAATGAACCTGGCT-TGTAGCAAGAGCAATCCGTGCACAGGAATCACATTACAGGA 1100
|||||||||| |||| | ||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 1021 GAAGCAATGAAGCTGG-TGTGTAGCAAGAGCAATCCATGCACGGGAATCACATTACAAGA 1079
Query 1101 CATTAAGCTTATTTACAACAAAGGAACCCCTGCTACTTCCTTCTGTTTCAATGCTGTTGG 1160
||| ||||||| ||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 1080 CATAAAGCTTACTTACAACAAAGGAACTCCTGCTACTTCCTTGTGCTTCAATGCTGTTGG 1139
Query 1161 GAAAAATCTTGGTGTTATTCAACCTACTAGTTGTCTAAA 1199
|||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GAAAAATCTTGGTGTTATTCAACCTACTAGTTGTCTAAA 1178
> AT1G05660.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:1694286-1696058 REVERSE LENGTH=1185
Length=1185
Score = 1676 bits (907), Expect = 0.0
Identities = 1099/1191 (92%), Gaps = 16/1191 (1%)
Strand=Plus/Plus
Query 22 ATGACAAAACCAGCTATAACA-TTTCCACTTATCTTCACACTTCTAACCTTCATCGATGT 80
||||||||| ||| ||||| | ||||| ||| ||||||||||||| |||||||| |||||
Sbjct 1 ATGACAAAATCAGTTATAAGATTTTCC-CTTCTCTTCACACTTCTCACCTTCATTGATGT 59
Query 81 CTCGAGCAGCGCCTCCATCGTTTTCAACGTCGTGAGCTTCGGGGCCAAACCAGACGGAGT 140
||||| |||||||||| ||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 60 CTCGATTAGCGCCTCCAACGTTTTCAACGTCGTTAGCTTCGGTGCCAAACCGGACGGAGT 119
Query 141 CACCGATTCCACCGCAGCATTCCTCAAGGCATGGCAAGGGGCTTGTGGCTCGGTATCTTC 200
||||||||| |||| |||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 120 CACCGATTCTACCGGAGCATTCCTCAAGGCATGGCAAGGGGCTTGTGTCTCAGCATCTTC 179
Query 201 AGCCACGGTGGTGGTCCCCACGGGGACATTTTTGTTGAAGGTAATAACGTTTGGAGGACC 260
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 180 AGCCACGGTGGTGGTCCCCAAGGGGACATTTCTGTTGAAGGTAATAACGTTTGGAGGACC 239
Query 261 ATGCAAGAGCAAAATCACATTTCAAGTGGCCGGAACCATCGTTGCTCCGGAAGATTACAG 320
|||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct 240 ATGCAAGAGCAAAATCACATTTCAAGTGGCTGGAACCGTCATTGCTCCGGAAGATTACAG 299
Query 321 GACCTTTGGCAATTCCGG-TTACTGGATTCTCTTCAACAAGGTTAACAGATTCTCACTGG 379
||||||||||||||| || || ||||||||||||||| ||||||||||||||||||||||
Sbjct 300 GACCTTTGGCAATTCTGGCTT-CTGGATTCTCTTCAATAAGGTTAACAGATTCTCACTGG 358
Query 380 TTGGTGGGACTTTCGACGCTCGAGCTAATGGGTTCTGGTCTTGCCGGAAATCTGGTCAGA 439
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TCGGTGGGACTTTCGACGCTCGAGCTAATGGGTTCTGGTCTTGCCGGAAATCTGGTCAGA 418
Query 440 ATTGTCCTCCCGGTGTTAGGTCAATATCGTTCAACTCGGCAAAAGACGTGATCATAAGTG 499
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATTGTCCTCCCGGTGTTAGATCAATATCGTTCAACTCGGCAAAAGACGTGATCATAAGTG 478
Query 500 GAGTGAAATCCATGAACAGCCAGGTCAGCCATATGACCCTCAACGGTTGCACCAATGTGG 559
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 479 GAGTGAAATCCATGAACAGCCAGGTCACCCATATGACCCTCAATGGTTGCACCAATGTGG 538
Query 560 TCGTCCGTAACGTCAGGCTGGTGGCTCCCGGAGACAGCCCAAACACTGACGGCTTC-ACC 618
||||||||||||||| ||| |||||||| ||| ||||||||||||| ||||| ||| ||
Sbjct 539 TCGTCCGTAACGTCAAGCTAGTGGCTCCTGGAAACAGCCCAAACACCGACGGTTTCCAC- 597
Query 619 GTTCAATTCTCCACTGGAGTCACATTCACCGGAAGCACCGTTCAGACCGGAGACGATTGT 678
||||| |||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 598 GTTCAGCACTCCACCGGGGTCACATTCACCGGAAGCACCGTTCAGACCGGAGATGATTGT 657
Query 679 GTTGCTATCGGTCAGGGGACCCGCAACTTCCTTATTTCCAAGCTTGCTTGTGGCCCAGGT 738
||||||||||| | || ||||||||| |||| || |||| |||||||||||||| |||
Sbjct 658 GTTGCTATCGGCCCTGGTACCCGCAACCTCCTCATCACCAAACTTGCTTGTGGCCCGGGT 717
Query 739 CACGGGGTTAGCATCGGGAGCTTGGCAAAGCAGTT-AAACGAAGACGGAGTAGAGAACGT 797
|||||||||||||| ||||||||||| ||| | | ||| ||||||||||||||||||||
Sbjct 718 CACGGGGTTAGCATAGGGAGCTTGGCGAAGGAACTGAAA-GAAGACGGAGTAGAGAACGT 776
Query 798 GACAGTATCGAGTTCGGTATTCACCGGAACACAAAACGGCGTGAGGATAAAGTCATGGGC 857
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 777 GACAGTATCGAGTTCGGTATTCACCGGATCACAAAACGGCGTGAGAATAAAGTCATGGGC 836
Query 858 GAGGCCGAGTACCGGATTCGTTAGGAAC-GTCTTCTTCCAAAACCTAATCATGAAGAACG 916
||||||||||| |||||||||||| ||| |||||||||||| ||||| ||||||||||||
Sbjct 837 GAGGCCGAGTAACGGATTCGTTAG-AACCGTCTTCTTCCAAGACCTAGTCATGAAGAACG 895
Query 917 TCCAAAACCCTATCATAATCGACCAAAACTACTGTCC--CTCCAAGCAAGGTTGCCCTAC 974
|| ||||||| |||||||||||||||||||| ||||| ||| | | ||||||||||||
Sbjct 896 TCGAAAACCCAATCATAATCGACCAAAACTATTGTCCTACTC-ACG-AAGGTTGCCCTAA 953
Query 975 TGAGCATTCAGGGGTGAAGATAAGCCAAGTGACCTATAAGAACATACAAGGAACGTCGGC 1034
|||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 954 TGAGTATTCTGGGGTGAAGATAAGCCAAGTGACATATAAGAACATACAAGGAACGTCGGC 1013
Query 1035 GACACAGCAAGCAATGAACCTGGCT-TGTAGCAAGAGCAATCCGTGCACAGGAATCACAT 1093
||||||| |||||||||| |||| | ||||||||||||| ||| ||||||||||||||||
Sbjct 1014 GACACAGGAAGCAATGAAGCTGG-TGTGTAGCAAGAGCAGTCCATGCACAGGAATCACAT 1072
Query 1094 TACAGGACATTAAGCTTATTTACAACAAAGGAACCCCTGCTACTTCCTTCTGTTTCAATG 1153
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1073 TACAGGACATTAAGCTTACTTACAACAAAGGAACTCCTGCTACTTCCTTCTGTTTCAATG 1132
Query 1154 CTGTTGGGAAAAATCTTGGTGTTATTCAACCTACTAGTTGTCTAAACAGAT 1204
|||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1133 CTGTTGGGAAAAGTCTTGGTGTTATTCAACCTACTAGTTGTCTAAACCGAT 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60240654000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5