BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919270
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05660.1 | Symbols: | Pectin lyase-like superfamily protein... 1940 0.0
AT1G05650.1 | Symbols: | Pectin lyase-like superfamily protein... 1696 0.0
> AT1G05660.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:1694286-1696058 REVERSE LENGTH=1185
Length=1185
Score = 1940 bits (1050), Expect = 0.0
Identities = 1141/1186 (96%), Gaps = 2/1186 (0%)
Strand=Plus/Plus
Query 22 ATGACAAAACCAGCTATAACATTTCCCCTTCTCTTCACACTTCTCACCTTCATCGATGTC 81
||||||||| ||| ||||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGACAAAATCAGTTATAAGATTTTCCCTTCTCTTCACACTTCTCACCTTCATTGATGTC 60
Query 82 TCGAGCACCGCCTCCAACGTTTTCAACGTCGTTAGCTTCGGGGCCAAACCGGACGGAGTC 141
|||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 TCGATTAGCGCCTCCAACGTTTTCAACGTCGTTAGCTTCGGTGCCAAACCGGACGGAGTC 120
Query 142 ACCGATTCTACCGCAGCATTCCTCAAGGCATGGCAACGGGCTTGTGGCTCGGCATCTTCA 201
||||||||||||| |||||||||||||||||||||| ||||||||| ||| |||||||||
Sbjct 121 ACCGATTCTACCGGAGCATTCCTCAAGGCATGGCAAGGGGCTTGTGTCTCAGCATCTTCA 180
Query 202 GCCACGGTGGTGGTTCCCAACGGGACATTTCTATTGAAGGTAATAACGTTTGGAGGGCCA 261
|||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 181 GCCACGGTGGTGGTCCCCAAGGGGACATTTCTGTTGAAGGTAATAACGTTTGGAGGACCA 240
Query 262 TGCAAGAGCAAAATCACATTTCAAGTGACCGGAACCGTCGTTGCTCCGGAAGATTACAGG 321
||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 241 TGCAAGAGCAAAATCACATTTCAAGTGGCTGGAACCGTCATTGCTCCGGAAGATTACAGG 300
Query 322 ACCTTTGGCAATTCCGG-TTACTGGATTCTCTTCAACAAGGTTAACAGATTCTCACTGGT 380
|||||||||||||| || || ||||||||||||||| |||||||||||||||||||||||
Sbjct 301 ACCTTTGGCAATTCTGGCTT-CTGGATTCTCTTCAATAAGGTTAACAGATTCTCACTGGT 359
Query 381 CGGTGGGACTTTCGACGCTCGAGCTAATGGGTTCTGGTCTTGCCGGAAATCTGGTCAGAA 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGGTGGGACTTTCGACGCTCGAGCTAATGGGTTCTGGTCTTGCCGGAAATCTGGTCAGAA 419
Query 441 TTGTCCTCCCGGTGTTAGGTCAATATCGTTCAACTCGGCAAAAGACGTGATCATAAGTGG 500
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTGTCCTCCCGGTGTTAGATCAATATCGTTCAACTCGGCAAAAGACGTGATCATAAGTGG 479
Query 501 AGTGAAATCGATGAACAGCCAGGTCAGCCATATGACCCTCAACGGTTGCACCAATGTAGT 560
||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| ||
Sbjct 480 AGTGAAATCCATGAACAGCCAGGTCACCCATATGACCCTCAATGGTTGCACCAATGTGGT 539
Query 561 CGTCCGTAACGTCAAGCTAGTGGCTCCCGGAAACAGCCCAAACACCGACGGTTTCCACGT 620
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 CGTCCGTAACGTCAAGCTAGTGGCTCCTGGAAACAGCCCAAACACCGACGGTTTCCACGT 599
Query 621 CCAGCTCTCCACCGGAGTCACATTCACCGGAAGCACCGTTCAGACCGGAGACGATTGTGT 680
|||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 TCAGCACTCCACCGGGGTCACATTCACCGGAAGCACCGTTCAGACCGGAGATGATTGTGT 659
Query 681 AGCTATCGGCCCTGGTACCCGCAACTTCCTCATCACCAAACTTGCTTGTGGCCCAGGTCA 740
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 660 TGCTATCGGCCCTGGTACCCGCAACCTCCTCATCACCAAACTTGCTTGTGGCCCGGGTCA 719
Query 741 CGGGGTTAGCATTGGGAGCTTGGCGAAGGAACTGAACGAAGACGGAGTAGAGAACGTGAC 800
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 CGGGGTTAGCATAGGGAGCTTGGCGAAGGAACTGAAAGAAGACGGAGTAGAGAACGTGAC 779
Query 801 AGTATCGAGTTCGGTATTCACCGGATCACAAAACGGCGTGAGAATAAAGTCATGGGCGAG 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGTATCGAGTTCGGTATTCACCGGATCACAAAACGGCGTGAGAATAAAGTCATGGGCGAG 839
Query 861 GCCGAGCACCGGATTCGTTAGAAACGTCTTCTTCCAAGACCTAGTCATGAAGAACGTCGA 920
|||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 840 GCCGAGTAACGGATTCGTTAGAACCGTCTTCTTCCAAGACCTAGTCATGAAGAACGTCGA 899
Query 921 AAACCCAATCATAATCGACCAAAACTATTGTCCTACTCACGAAGGTTGCCCTAATGAGTA 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AAACCCAATCATAATCGACCAAAACTATTGTCCTACTCACGAAGGTTGCCCTAATGAGTA 959
Query 981 TTCTGGGGTGAAGATAAGCCAAGTGACATATAAGAACATACAAGGAACGTCGGCGACACA 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TTCTGGGGTGAAGATAAGCCAAGTGACATATAAGAACATACAAGGAACGTCGGCGACACA 1019
Query 1041 GGAAGCAATGAAGCTGGTGTGTAGCAAGAGCAGTCCATGCACAGGAATCACATTACAGGA 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GGAAGCAATGAAGCTGGTGTGTAGCAAGAGCAGTCCATGCACAGGAATCACATTACAGGA 1079
Query 1101 CATTAAGCTTATTTACAACAAAGGAACTCCTGCTACGTCCTTGTGTTTCAATGCTGTTGG 1160
||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1080 CATTAAGCTTACTTACAACAAAGGAACTCCTGCTACTTCCTTCTGTTTCAATGCTGTTGG 1139
Query 1161 GAAAAGTCTTGGTGTTATTCAACCTACTAGTTGTCTAAACCGATGA 1206
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GAAAAGTCTTGGTGTTATTCAACCTACTAGTTGTCTAAACCGATGA 1185
> AT1G05650.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:1690264-1692126 REVERSE LENGTH=1185
Length=1185
Score = 1696 bits (918), Expect = 0.0
Identities = 1100/1189 (93%), Gaps = 8/1189 (1%)
Strand=Plus/Plus
Query 22 ATGACAAAACCAGCTATAACATTTCCCCTTCTCTTCACACTTCTCACCTTCATCGATGTC 81
||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1 ATGACAAAATCAGCTATAACATTTCCACTTATCTTCACACTTCTCACCTTCATCGATGTC 60
Query 82 TCGAGCACCGCCTCCAACGTTTTCAACGTCGTTAGCTTCGGGGCCAAACCGGACGGAGTC 141
||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 61 TCGAGCAGCGCCTCCATTGTTTTCAACGTCGTGAGCTTCGGGGCCAAACCAGACGGAGTC 120
Query 142 ACCGATTCTACCGCAGCATTCCTCAAGGCATGGCAACGGGCTTGTGGCTCGGCATCTTCA 201
|||||||| || ||||||||||| |||||||||||| ||||||||||||||||| | |||
Sbjct 121 ACCGATTCCACAGCAGCATTCCTAAAGGCATGGCAAGGGGCTTGTGGCTCGGCAGCATCA 180
Query 202 GCCACGGTGGTGGTTCCCAAC-GGGACATTTCTATTGAAGGTAATAACGTTTGGAGGGCC 260
||||||||||||| |||| || ||||||||| | ||||||||||||||||||||||||||
Sbjct 181 GCCACGGTGGTGG-TCCCCACGGGGACATTTTTGTTGAAGGTAATAACGTTTGGAGGGCC 239
Query 261 ATGCAAGAGCAAAATCACATTTCAAGTGACCGGAACCGTCGTTGCTCCGGAAGATTACAG 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 ATGCAAGAGCAAAATCACATTTCAAGTGACCGGAACCGTCGTTGCTCCGGAAGATTATAG 299
Query 321 GACCTTTGGCAATTCCGGTTACTGGATTCTCTTCAACAAGGTTAACAGATTCTCACTGGT 380
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 300 GACCTTTGGCAATTCCGGTTCCTGGATTCTCTTCAACAAGGTTAACAGATTCTCACTGGT 359
Query 381 CGGTGGGACTTTCGACGCTCGAGCTAATGGGTTCTGGTCTTGCCGGAAATCTGGTCAGAA 440
|||||||||||| |||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 360 CGGTGGGACTTTTGACGCTCGAGGTAGTGGGTTCTGGTCTTGCCGGAAATCTGGCCAGAA 419
Query 441 TTGTCCTCCCGGTGTTAGGTCAATATCGTTCAACTCGGCAAAAGACGTGATCATAAGTGG 500
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 TTGTCCTCCCGGTGTTAGGTCAATATCGTTCAACTCCGCAAAAGACGTGATCATAAGTGG 479
Query 501 AGTGAAATCGATGAACAGCCAGGTCAGCCATATGACCCTCAACGGTTGCACCAATGTAGT 560
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 480 AGTGAAATCGATGAACAGCCAGGTTAGCCATATGACCCTCAACGGTTGCACCAATGTGGC 539
Query 561 CGTCCGTAACGTCAAGCTAGTGGCTCCCGGAAACAGCCCAAACACCGACGGTTTCCAC-G 619
|||||||||| | | ||| |||||||||||| ||||||||||||| ||||| ||| || |
Sbjct 540 CGTCCGTAACATTAGGCTGGTGGCTCCCGGAGACAGCCCAAACACTGACGGCTTC-ACCG 598
Query 620 TCCAGCTCTCCACCGGAGTCACATTCACCGGAAGCACCGTTCAGACCGGAGACGATTGTG 679
| ||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 599 TTCAGTTCTCCACTGGAGTCACATTAACCGGAAGCACCGTTCAGACCGGAGACGATTGTG 658
Query 680 TAGCTATCGGCCCTGGTACCCGCAACTTCCTCATCACCAAACTTGCTTGTGGCCCAGGTC 739
| |||||||| | || |||||||||||||| || |||| |||||||||||||||||||
Sbjct 659 TTGCTATCGGTCAGGGGACCCGCAACTTCCTAATTTCCAAGCTTGCTTGTGGCCCAGGTC 718
Query 740 ACGGGGTTAGCATTGGGAGCTTGGCGAAGGAACTGAACGAAGACGGAGTAGAGAACGTGA 799
||||||||||||| ||||| ||||| ||| | | |||||||||||||||||||||||||
Sbjct 719 ACGGGGTTAGCATCGGGAGTTTGGCAAAGCAGTTAAACGAAGACGGAGTAGAGAACGTGA 778
Query 800 CAGTATCGAGTTCGGTATTCACCGGATCACAAAACGGCGTGAGAATAAAGTCATGGGCGA 859
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 779 CAGTATCGAGTTCGGTATTCACCGGATCACAAAACGGCGTGAGGATAAAGTCATGGGCGA 838
Query 860 GGCCGAGCACCGGATTCGTTAGAAACGTCTTCTTCCAAGACCTAGTCATGAAGAACGTCG 919
||||||| |||||||||||||||||||||||||| ||| | ||| |||||| |||||||
Sbjct 839 GGCCGAGTACCGGATTCGTTAGAAACGTCTTCTTTCAAAATCTAATCATGAGGAACGTCC 898
Query 920 AAAACCCAATCATAATCGACCAAAACTATTGTCC-TACTCA-CGAAGGTTGCCCTAATGA 977
||||||| |||||||||||||||||||||||||| | | || | |||||||||||| |||
Sbjct 899 AAAACCCTATCATAATCGACCAAAACTATTGTCCGT-C-CAACCAAGGTTGCCCTACTGA 956
Query 978 GTATTCTGGGGTGAAGATAAGCCAAGTGACATATAAGAACATACAAGGAACGTCGGCGAC 1037
| |||| ||||||||||||| ||||||||| || ||||||||||||||||| ||||||||
Sbjct 957 GCATTCGGGGGTGAAGATAACCCAAGTGACGTACAAGAACATACAAGGAACTTCGGCGAC 1016
Query 1038 ACAGGAAGCAATGAAGCTGGTGTGTAGCAAGAGCAGTCCATGCACAGGAATCACATTACA 1097
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1017 GCAGGAAGCAATGAAGCTGGTGTGTAGCAAGAGCAATCCATGCACGGGAATCACATTACA 1076
Query 1098 GGACATTAAGCTTATTTACAACAAAGGAACTCCTGCTACGTCCTTGTGTTTCAATGCTGT 1157
||||| ||||||| |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1077 AGACATAAAGCTTACTTACAACAAAGGAACTCCTGCTACTTCCTTGTGCTTCAATGCTGT 1136
Query 1158 TGGGAAAAGTCTTGGTGTTATTCAACCTACTAGTTGTCTAAACCGATGA 1206
|||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1137 TGGGAAAAATCTTGGTGTTATTCAACCTACTAGTTGTCTAAATCGATGA 1185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60290854545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5