BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919275
Length=490
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05710.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 420 7e-117
AT2G31730.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 351 3e-96
> AT1G05710.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:1714950-1717270 FORWARD LENGTH=1200
Length=1200
Score = 420 bits (227), Expect = 7e-117
Identities = 239/245 (98%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 21 ATGGAATTCTCTAGAGACGCTGGAATGATGATGGAGAACAAGCGGAATGTCTGCTCTCTC 80
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 438 ATGGAATTCTCTAGAGACGCTGGAATGATGATGGAGAATAAGCGGAATGTCTGCTCTCTC 497
Query 81 GGAGAAAGCAGTATCAAACGGCACAAGTCTGATCTCTCTTTCAATACCAAGGAGAGGAAG 140
|||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||
Sbjct 498 GGAGAAAGCAGTATCAAACGCCACAAGTCTGATCTCTCTTTCAGTTCCAAGGAGAGGAAG 557
Query 141 GACAAAGTTGGAGAACGTATTTCAGCTCTTCAACAAATAGTTTCCCCTTACGGAAAGACC 200
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 558 GACAAGGTTGGAGAACGTATTTCAGCTCTTCAACAAATAGTTTCCCCTTATGGAAAGACC 617
Query 201 GACACTGCATCAGTTCTTCTAGACGCGATGCATTACATAGAGTTTCTTCACGAACAAGTG 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 GACACTGCATCAGTTCTTCTAGACGCGATGCATTACATAGAGTTTCTTCACGAACAAGTG 677
Query 261 AAGGT 265
|||||
Sbjct 678 AAGGT 682
Score = 374 bits (202), Expect = 5e-103
Identities = 220/229 (96%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 262 AGGTGCTAAGTGCTCCATATCTGCAAACGATACCTGATGTTACGCAGGAGGAGCTGGAGC 321
|||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 745 AGGTGCTAAGTGCTCCGTATCTGCAAACGGTACCTGATGCTACGCAGGAGGAGCTGGAGC 804
Query 322 AGTACAGCCTGAGAAACAGAGGATTATGTCTTGTTCCAATGGAGAATACAGTTGGAGTTG 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 AGTACAGCCTGAGAAACAGAGGATTATGTCTTGTTCCAATGGAGAATACAGTTGGAGTTG 864
Query 382 CTCAAAGCAACGGAGCTGATATCTGGGCGCCCGTGAAGACTCCTCTATCTCCAGCTTTCA 441
||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 865 CTCAAAGCAACGGCGCTGATATATGGGCGCCCGTGAAGACTCCTCTATCACCAGCTTTCA 924
Query 442 GTGTCACATCTCAATCACCCTTTAGATGACCAATTCGGCTTTTCACCTA 490
||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 925 GTGTCACATCTCAATCACCCTTTAGATGACCAATTCGACTAATCACCTA 973
> AT2G31730.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:13487568-13489679 REVERSE
LENGTH=1020
Length=1020
Score = 351 bits (190), Expect = 3e-96
Identities = 347/420 (83%), Gaps = 22/420 (5%)
Strand=Plus/Plus
Query 19 GAATGGAATTCTCTAGAGACGCTG--GA-ATGATGATGGAGAAC-AAGCGGAATGTCTGC 74
||||||||| |||||||||| | | || |||||||||||| || ||||| ||||||| |
Sbjct 342 GAATGGAATACTCTAGAGACTCGGCAGAGATGATGATGGAG-ACTAAGCGCAATGTCTAC 400
Query 75 TCTCTCGGAGA-AAGCAGTATCAAACGGCACAAG---TCTGATCTCTCTTTCAATACCAA 130
|| || | ||| || || || ||||| |||||| ||||||||||||||| | ||||
Sbjct 401 TCGCTTGAAGATAA-CAAAATTAAACGACACAAGTCATCTGATCTCTCTTTCTCTTCCAA 459
Query 131 GGAGAGGAAGGACAAAGTT-GGAGAACGTATTTCAGCTCTTCAACAAATAGTTTCCCCTT 189
||||||||| |||||| || | ||||||||||||||||||||||||| ||||||||||||
Sbjct 460 GGAGAGGAAAGACAAA-TTAGCAGAACGTATTTCAGCTCTTCAACAACTAGTTTCCCCTT 518
Query 190 ACGGAAAGACCGACACTGCATCAGTTCTTCTAGACGCGA-TGCATTACATAGAGTTTCTT 248
|||||||||||||||||||||||||||||||||| | || |||| ||||| ||||||||
Sbjct 519 ACGGAAAGACCGACACTGCATCAGTTCTTCTAGAGG-GAATGCAATACATTCAGTTTCTT 577
Query 249 CACGAACAAGTGAAGGTGCTAAGTGCTCCATATCTGCAAACGATACCTGATGTTAC-GCA 307
|| |||||||| ||||| ||||||||||| ||||||||| | | ||| | ||| | |
Sbjct 578 CAAGAACAAGTCAAGGTTCTAAGTGCTCCTTATCTGCAAGCAACCCCTTCTACTACAG-A 636
Query 308 GGAGGA-GCTGGA-GCAGTACAGCCTGAGAAACAGAGGATTATGTCTTGTTCCAATGGAG 365
|||||| | |||| | |||||||| | |||| | ||| |||||||||||||| |||||
Sbjct 637 GGAGGAAG-TGGAAG-AGTACAGCTTAAGAAGTAAAGGGCTATGTCTTGTTCCATTGGAG 694
Query 366 AATACAGTTGGA-GTTGCTCAAAGCAACGGAGCTGATATCTGGGCGCCCGTGAAGACTCC 424
||||| | || |||||||||| ||| || |||||||| ||||| || |||||||||||
Sbjct 695 TATACA-TCAGAAGTTGCTCAAACCAATGGTGCTGATATTTGGGCTCCTGTGAAGACTCC 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23358878355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5