BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919287
Length=697
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05810.1 | Symbols: ARA, ARA-1, ATRAB11D, ATRABA5E, RABA5E |... 1070 0.0
AT2G31680.1 | Symbols: AtRABA5d, RABA5d | RAB GTPase homolog A5... 608 2e-173
AT1G16920.1 | Symbols: RAB11, ATRABA1B, RABA1b | RAB GTPase hom... 89.8 3e-17
> AT1G05810.1 | Symbols: ARA, ARA-1, ATRAB11D, ATRABA5E, RABA5E
| RAB GTPase homolog A5E | chr1:1748314-1749460 FORWARD LENGTH=896
Length=896
Score = 1070 bits (579), Expect = 0.0
Identities = 663/703 (94%), Gaps = 7/703 (1%)
Strand=Plus/Plus
Query 1 GAAGAAGA-AG-GAAGATAACGATGTCTTCGGACGACGAAGGAAGAGAGGAGTATCTCTT 58
|||||||| | |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 108 GAAGAAGACGGTGAAGCGAGCGATGTCTTCGGACGACGAAGGAAGAGAGGAGTATCTCTT 167
Query 59 CAAGATAGTTGTCATCGGCGACTCTGCGGTCGGTAAATCTAATCTTCTGTCTCGTTACGC 118
|||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 168 CAAGATTGTTGTTATCGGCGACTCTGCCGTCGGTAAATCTAATCTTCTATCTCGTTACGC 227
Query 119 TCGTAACGAGTTCAGTGCGAATTCCAAGGCGACGATCGGAGTCGAGTTTCAGACGCAGAG 178
|||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 228 ACGTAACGAGTTCAGCGCTAACTCCAAGGCGACGATCGGAGTCGAGTTTCAGACGCAGAG 287
Query 179 TATGGAGATTGAAGGTAAAGAGGTTAAGGCTCAGATTTGGGACACTGCTGGTCAGGAGCG 238
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 288 CATGGAGATTGAAGGTAAAGAGGTCAAGGCTCAGATTTGGGACACTGCTGGTCAGGAGC- 346
Query 239 GTTT-CGTGCCGTCACTTCCGCTTATTACCGTGGCGCTGTCGGTGCGCTCGTCGTTTACG 297
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 347 GTTTCCGTGCCGTCACTTCCGCTTATTACCGTGGCGCTGTCGGTGCCCTCGTCGTTTACG 406
Query 298 ACATTACCCGCCGCACCACTTTCGAAAGCGTTGGACGTTGGCTCGATGAGCTTAAGATCC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 ACATTACCCGCCGCACCACTTTCGAAAGCGTTGGACGTTGGCTCGATGAGCTTAAGATCC 466
Query 358 ATTCGGATACAACGGTGGCGAGAATGCTGGTGGGGAACAAGTGTGATCTAGAAAACATAA 417
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 ATTCGGATACGACGGTGGCGAGAATGCTGGTGGGGAACAAGTGTGATCTAGAAAACATAA 526
Query 418 GAGCAGTGAGCGTGGACGAAGGAAAGGCCCTAGCAGAAGCGGAGGGGCTCTTCTTTGTGG 477
|||||||||||||||| ||||||||||| ||||| |||| ||| || |||||||||||||
Sbjct 527 GAGCAGTGAGCGTGGAGGAAGGAAAGGCTCTAGCCGAAGAGGAAGGACTCTTCTTTGTGG 586
Query 478 AAACATCGGCTCTTGATTCCACCAATGTTAAAACAGCTTTCGAAATGGTGATACTTGACA 537
||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| |
Sbjct 587 AAACATCGGCTCTTGATTCGACTAATGTTAAAACAGCTTTCGAGATGGTGATACTTGATA 646
Query 538 TCTACAATAACGTGAGCCGTAAGCAACTCAACTCAGACACTTATAAAGATGAACTCACCG 597
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 647 TCTACAATAACGTGAGCCGTAAGCAACTCAACTCAGATACTTATAAAGACGAACTCACCG 706
Query 598 TGAACCGGGTAAGTCTTGTTAAGGATGATAACACTGCCTCCAAACAAAGCTCTGGTTTCT 657
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 707 TGAATCGGGTAAGTCTTGTTAAGGATGATAACTCTGCCTCCAAACAAAGCTCTGGTTTCT 766
Query 658 CTTGTTGTTCTTCCTCTTGAT-A-ATACCAC-CCAATATTATC 697
|||||||||||||| |||||| | ||||||| |||| || |||
Sbjct 767 CTTGTTGTTCTTCCACTTGATGATATACCACACCAAAATAATC 809
> AT2G31680.1 | Symbols: AtRABA5d, RABA5d | RAB GTPase homolog
A5D | chr2:13473594-13475052 REVERSE LENGTH=942
Length=942
Score = 608 bits (329), Expect = 2e-173
Identities = 561/672 (83%), Gaps = 19/672 (3%)
Strand=Plus/Plus
Query 17 AACGATGTCTTCGGACGACGAAGGAAGAGAGGAGTATCTCTTCAAGATAGTTG-TCATCG 75
||||||||| || || ||||||||| |||| |||||||| |||||||||| || | ||||
Sbjct 92 AACGATGTCGTCCGATGACGAAGGAGGAGAAGAGTATCTATTCAAGATAG-TGATAATCG 150
Query 76 GCGACTCTGCGGTCGGTAAATCTAATCTTCTGTCTCGTTACGCTCGTAACGAGTTCAGTG 135
|||||||||| ||||| ||||| || ||||| ||||| || |||||||||||||||| |
Sbjct 151 GCGACTCTGCCGTCGGGAAATCGAACCTTCTCTCTCGCTATGCTCGTAACGAGTTCAACG 210
Query 136 CGAATTCCAAGGCGACGATCGGAGTCGAGTTTCAGACGCAGAGTATGGAGATTGAAGGTA 195
| |||||||||| |||||||| |||||||| |||||||||| |||||| || |||||||
Sbjct 211 CTCATTCCAAGGCCACGATCGGCGTCGAGTTCCAGACGCAGAATATGGAAATCGAAGGTA 270
Query 196 AAGAGGTTAAGGCTCAGATTTGGGACACTGCTGGTCAGGAGCGGTTTCGTGCCGTCACTT 255
|||| ||||| |||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 271 AAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAACGGTTTCGTGCCGTCACTT 330
Query 256 CCGCTTATTACCGTGGCGCTGTCGGTGCGCTCGTCGTTTACGACATTACCCGCCGCA-CC 314
|||||||||| || ||||| ||||| || |||||||||||||| |||| || || | ||
Sbjct 331 CCGCTTATTATCGCGGCGCCGTCGGAGCTCTCGTCGTTTACGATATTAGTCGTCG-ATCC 389
Query 315 AC-TTTCGAAAGCGTTGGACGTTGGCTCGATGAGCTTAAGATC-CATTCGGATACAACGG 372
|| ||| || || ||||| |||||||| |||||||| |||| | ||||||||||||||||
Sbjct 390 ACGTTT-GAGAGTGTTGGTCGTTGGCTTGATGAGCTCAAGA-CACATTCGGATACAACGG 447
Query 373 TGGCGAGAATGCTGGTGGGGAACAAGTGTGATCTAGAAAACATAAGAGCAGTGAGCGTGG 432
| ||||| ||||||||||| ||||| || |||||||||| ||||||||| ||||||||||
Sbjct 448 TTGCGAGGATGCTGGTGGGAAACAAATGCGATCTAGAAAGCATAAGAGCGGTGAGCGTGG 507
Query 433 ACGAAGG-AAAGGCCCTAGCAGAAGCGGAGGGGCTCTTCTTTG-TGGAAACATCGGCTCT 490
| ||||| |||| | ||||| ||| | || || || || ||| |||||||||| |||||
Sbjct 508 AAGAAGGCAAAG-CACTAGCTGAAACCGAAGGACTATT-TTTCATGGAAACATCAGCTCT 565
Query 491 TGATTCCACCAATGTTAAAACAGCTTTCGAAATGGTGATACTTGACATCTACAATAACGT 550
||||| || |||||||||||||||||||||||||| || | ||||||||| | || |
Sbjct 566 CGATTCAACAAATGTTAAAACAGCTTTCGAAATGGTAATCCGTGACATCTATACCAATAT 625
Query 551 GAGCCGTAAGCAACTCAACTCAGACACTTATAAAGAT-GAACTCACCGTGAAC--CGG-G 606
||||| || ||||||||||| |||||||||||| | ||||| | | |||| | | |
Sbjct 626 AAGCCGGAAACAACTCAACTCCGACACTTATAAA-ACCGAACTAAGCATGAAAAACAGAG 684
Query 607 TAAGTCTTGTTAAGGATGATAACACT-GCCTCCAAACAAAGCTCTGGTTTCTCTTGTTGT 665
| ||||| |||||||| ||||| | || |||| |||| ||| |||||||||||| |||
Sbjct 685 TCAGTCTCGTTAAGGACGATAATAAAAGC-TCCACACAAGGCTTTGGTTTCTCTTGCTGT 743
Query 666 TCTTCCTCTTGA 677
|||||||| |||
Sbjct 744 TCTTCCTCGTGA 755
> AT1G16920.1 | Symbols: RAB11, ATRABA1B, RABA1b | RAB GTPase homolog
A1B | chr1:5787330-5789249 REVERSE LENGTH=912
Length=912
Score = 89.8 bits (48), Expect = 3e-17
Identities = 74/87 (85%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 201 GTTAAGGCTCAGATTTGGGACACTGCTGGTCAGGAGCGGTTTCGTGCCGTCACTTCCGCT 260
||||| |||||||||||||||||||||||||||||| ||| |||||| ||||| ||
Sbjct 286 GTTAAAGCTCAGATTTGGGACACTGCTGGTCAGGAGAGGTACCGTGCCATCACTAGTGCA 345
Query 261 TATTACCGTGGCGCTGTCGGTGCGCTC 287
||||||||||| || || ||||| |||
Sbjct 346 TATTACCGTGGAGCCGTGGGTGCACTC 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33757346784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5