BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919288
Length=1651
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05820.1 | Symbols: SPPL5, ATSPPL5 | SIGNAL PEPTIDE PEPTIDAS... 2630 0.0
> AT1G05820.1 | Symbols: SPPL5, ATSPPL5 | SIGNAL PEPTIDE PEPTIDASE-LIKE
5 | chr1:1749682-1753767 FORWARD LENGTH=1705
Length=1705
Score = 2630 bits (1424), Expect = 0.0
Identities = 1561/1628 (96%), Gaps = 6/1628 (0%)
Strand=Plus/Plus
Query 7 TTCTCACGGTAGCGATGTCATTACCTCCGTTTAGC-TGCCGCTTTCTCGCGGCGGCCGTA 65
|||||||||| |||||||| ||||||||||||| | |||||| ||||||||||||| |
Sbjct 81 TTCTCACGGTGGCGATGTCTTTACCTCCGTTTA-CTTGCCGCCTTCTCGCGGCGGCGGCG 139
Query 66 ACCCTCTATCTGATAGGTCTGTTGTGCGTTGGGGCTGACACGAAAGATGTTACCGTTCCC 125
| |||||||||||||||||| ||||||| || |||||||||||||||||||||| ||||
Sbjct 140 GCTCTCTATCTGATAGGTCTGCTGTGCGTCGGAGCTGACACGAAAGATGTTACCGCTCCC 199
Query 126 AACATTCCAGGTTGCTCCAATGAATTTCAAATGGTCAAAGTCGAGAATTGGGTCAATGGA 185
|| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 200 AAAATTCCTGGTTGCTCCAATGAATTTCAAATGGTCAAAGTTGAGAATTGGGTCAACGGA 259
Query 186 GAAAACGGTGAGACTTTTACAGCCATGACTGCACAGTTTGGCACCATGCTCCCGTTTGAT 245
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 260 GAAAACGGTGAGACTTTTACCGCCATGACTGCACAGTTTGGCACCATGCTCCCGTCTGAT 319
Query 246 AAAGACAAAGCTGTTAAACTTCCGGTTGCTCTTACCACTCCTTTGGACAGTTGCTCCAAT 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 AAAGACAAAGCTGTTAAACTTCCGGTTGCTCTTACCACTCCTTTGGACAGTTGCTCCAAT 379
Query 306 TTGACTTCAAAGCTATC-TGGTTCTATAGCGTTATCTCTACGTGGCGAATGTGCTTTCAC 364
|| |||||||||||||| ||| ||||||||||||||| |||||||||| |||||||||||
Sbjct 380 TTAACTTCAAAGCTATCTTGG-TCTATAGCGTTATCTGTACGTGGCGAGTGTGCTTTCAC 438
Query 365 AGCTAAGGCTGAAGTTGCACAGGCAGGAGGAGCTGCAGCTTTGGTGTTAATAAACGACAA 424
|| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 439 AGTTAAGGCTCAAGTTGCACAGGCAGGAGGAGCTGCAGCTTTGGTGTTAATTAACGACAA 498
Query 425 AGAAGAGCTTGATGAGATGGTTTGTGGTGAGAAAGACACCTCCTTAAATATTTCTATACC 484
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 499 AGAAGAGCTTGATGAGATGGTTTGTGGTGAGAAAGATACCTCCTTAAATGTTTCTATACC 558
Query 485 TATTTTGATGATTACAACATCATCTGGAGATGCCCTGAAGAAATCCATTATGCAAAATAA 544
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 559 TATTTTGATGATTACAACGTCATCTGGAGATGCCCTGAAGAAATCCATTATGCAAAATAA 618
Query 545 GAAAGTGGAGCTTTTATTGTATGCTCCAAAGAGCCCAATTTTGGATTATGCAGTGGTCTT 604
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 619 GAAAGTGGAGCTTTTATTGTATGCTCCAAAGAGCCCAATTGTGGATTATGCAGTGGTCTT 678
Query 605 CCTCTGGCTAATGTCTGTTGGAACAGTTTTCGTTGCTTCTGTTTGGTCACATTTTACCAG 664
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 679 CCTCTGGCTAATGTCTGTTGGAACAGTTTTTGTTGCTTCTGTTTGGTCACATGTTACCAG 738
Query 665 TCCGAAGAAGAATGATGAGCAGTACGATGAATTATCACCCAAGAAATCTTCAAATGATGA 724
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 739 TCCGAAGAAGAATGATGAGCAGTACGATGAATTATCACCCAAGAAATCTTCGAATGTTGA 798
Query 725 CGCTACCAAAGGTGGTGCTGAAGAGGAAACTCTTGATATCAGTGCTATGGGTGCTGTTAT 784
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 799 CGCTACCAAAGGTGGTGCTGAAGAGGAAACTCTTGATATTAGTGCTATGGGTGCTGTTAT 858
Query 785 CTTTGTCATATCAGCGTCCACATTCCTCGTTTTGCTCTTCTTCTTCATGTCATCGTGGTT 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 CTTTGTCATATCAGCGTCCACATTCCTCGTTTTGCTCTTCTTCTTCATGTCATCGTGGTT 918
Query 845 TATCTTGATCCTGACCATAtttttttG-CATTGGTGGTATGCAGGGAATGCATAATATTA 903
||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 919 TATCTTGATCCTGACCATA-TTTTTCGTCATTGGTGGTATGCAGGGAATGCATAATATTA 977
Query 904 TCACTACACTCATAACAAGGAGATGCAATAAATGTGGCCAGAAGAACGTAAAACTCCCTC 963
| ||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||
Sbjct 978 ACGTTACACTCATAACAAGGAGATGCAGTAAATGTGGCCAGAAGAATTTAAAACTACCTC 1037
Query 964 TGCTTGGGAATACCTCAATTCTCTCACTCGTGGTTTTGTTATTCTGCTTTGTGGTTGCTA 1023
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1038 TGCTTGGGAATACCTCGATTCTCTCACTCGTGGTTCTGTTATTCTGCTTTGTGGTTGCTA 1097
Query 1024 TCCTCTGGTTTATGAAGCGCAAAACTTCGTATGCATGGGCCGGCCAAGATATTTTTGGTA 1083
|||||||||||||||| |||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 1098 TCCTCTGGTTTATGAATCGCAAAACTTCGCACGCATGGGCCGGGCAAGATATTTTTGGTA 1157
Query 1084 TTTGCATGATGATTAATGTCTTGCAAGTGGCTCGGCTACCTAATATCAGGGTTGCTACCA 1143
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1158 TTTGCATGATGATTAATGTCTTGCAAGTAGCTCGGCTACCTAATATCAGGGTTGCTACCA 1217
Query 1144 TTCTTCTCTGTTGTGCATTTTTCTATGACATCTTTTGGGTATTCCTATCACCACTAATCT 1203
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1218 TTCTTCTCTGTTGTGCATTTTTCTATGACATCTTTTGGGTATTCATATCACCACTAATCT 1277
Query 1204 TCAAGCAAAGTGTAATGATTGCGGTTGCACGTGGGAGCAAAGACACTGGAGAATCTATTC 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 TCAAGCAAAGTGTAATGATTGCGGTTGCACGTGGGAGCAAAGACACTGGAGAATCTATTC 1337
Query 1264 CCATGCTTTTGAGAATTCCACGGCTTTCTGATCCATGGGGTGGTTACAACATGATCGGTT 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 CCATGCTTTTGAGAATTCCACGGCTTTCTGATCCATGGGGTGGTTACAACATGATCGGTT 1397
Query 1324 TTGGAGACATTCTTTTCCCGGGCCTTCTCATATGCTTTATTTTCAGATATGACAAGGAAA 1383
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1398 TTGGAGACATTCTTTTCCCGGGCCTTCTCATATGCTTTATTTTCAGATTTGACAAGGAAA 1457
Query 1384 ACAACAAAGGAGTCTCGAATGGATATTTTCCGTGGTTGATGTTTGGCTACGGACTTGGCC 1443
| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 ATAACAAGGGGGTCTCGAATGGATATTTTCCGTGGTTGATGTTTGGCTACGGACTTGGCC 1517
Query 1444 TTTTCTTAACATACTTGGGATTGTATGTAATGAACGGACACGGTCAACCTGCATTGCTCT 1503
| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 1518 TCTTCTTAACATACTTGGGATTGTATGTTATGAATGGACACGGTCAACCTGCATTGCTAT 1577
Query 1504 ATCTTGTCCCTTGCACGCTCGGAATCACGGTCATTCTCGGGTTGGTGAGGAGAGAACTCA 1563
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1578 ATCTTGTCCCTTGCACGCTCGGAATCACGGTCATTCTAGGGTTGGTGAGGAAAGAACTCA 1637
Query 1564 GAGACTTGTGGAACTATGGGACTCAACAGCCTTCAGCTGCAGATGTAAATCCATCTCCAG 1623
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1638 GAGACTTGTGGAACTACGGGACTCAACAGCCTTCAGCTGCAGACGTAAATCCATCTCCAG 1697
Query 1624 AAGCATAA 1631
||||||||
Sbjct 1698 AAGCATAA 1705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81575885625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5