BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919305
Length=494
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05990.1 | Symbols: RHS1 | EF hand calcium-binding protein f... 763 0.0
AT4G03290.1 | Symbols: | EF hand calcium-binding protein famil... 401 3e-111
> AT1G05990.1 | Symbols: RHS1 | EF hand calcium-binding protein
family | chr1:1818447-1819040 FORWARD LENGTH=594
Length=594
Score = 763 bits (413), Expect = 0.0
Identities = 452/471 (96%), Gaps = 2/471 (0%)
Strand=Plus/Plus
Query 4 CTACAAATTTAAAAGAGATGGATCCGACAGAGCTAAAACGTGTGTTCCAAATGTTCGACA 63
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 125 CTACAACTTTAAAAGAGATGGATCCGACAGAGCTAAAACGCGTGTTCCAAATGTTCGACA 184
Query 64 AGAATGGCGACGGGACAATCACGGGGAAAGAGCTGAGTGAGACACTGA-AAAGCCTCGGG 122
|||| || |||||||| |||||||||||||||||||| |||||||| | |||||| |||
Sbjct 185 AGAACGGGGACGGGACGATCACGGGGAAAGAGCTGAGCGAGACACT-ACGAAGCCTAGGG 243
Query 123 ATTTACATCCCCGACAAGGAGTTGACTCAAATGATCGAGAAGATCGACGTGAATGGTGAC 182
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 ATTTACATCCCGGACAAGGAGTTGACTCAAATGATCGAGAAGATCGACGTGAATGGTGAT 303
Query 183 GGGTGCGTGGACATAGACGAGTTTGGTGAGCTTTACAAGACGATAATGGACGAGGAAGAC 242
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 304 GGGTGCGTGGACATAGACGAGTTTGGTGAGCTATACAAGACGATAATGGACGAGGAAGAC 363
Query 243 GAAGAAGAAGAGGACATGAAGGAAGCTTTCAATGTGTTTGATCAGAATGGAGATGGGTTT 302
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 364 GAAGAAGAAGAGGACATGAAAGAAGCTTTCAATGTGTTTGATCAGAATGGAGATGGGTTT 423
Query 303 ATAACCGTGGATGAATTGAAGGCGGTTTTGTCTTCCTTGGGGCTCAAACAAGGTAAGACC 362
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 ATAACGGTGGATGAATTGAAGGCGGTTTTGTCTTCCTTGGGGCTCAAACAAGGTAAGACC 483
Query 363 TTGGATGATTGTAAGAAGATGATAAAGCAAGTGGATGTTGATGGTGATGGTAGGGTTAAC 422
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 484 TTGGACGATTGTAAGAAGATGATAAAGAAAGTGGATGTTGATGGTGATGGTAGGGTTAAC 543
Query 423 TACAACGAGTTTAGACAAATGATGAAAGGCGGTGGTTTTAGTTCTTTGTAG 473
||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 544 TACAAAGAGTTTAGACAAATGATGAAAGGCGGTGGTTTTAATTCTTTGTAG 594
> AT4G03290.1 | Symbols: | EF hand calcium-binding protein family
| chr4:1442634-1443499 FORWARD LENGTH=866
Length=866
Score = 401 bits (217), Expect = 3e-111
Identities = 407/496 (82%), Gaps = 23/496 (5%)
Strand=Plus/Plus
Query 12 TTAAAAGAGATGGA-TCCGACAGAGCTAAAACGTGTGTTCCAAATGTTCGACAAGAATGG 70
|||||| | ||||| ||| || ||||| || |||||||||||||||||||||||| | ||
Sbjct 171 TTAAAACAAATGGATTCC-ACGGAGCTGAACCGTGTGTTCCAAATGTTCGACAAGGACGG 229
Query 71 CGACGGGACA-ATCACGGGGAAAGAGCTGAGTGAGACACTGAA-AAGCCTCGGGAT-TTA 127
||||||| | ||||| ||| ||||||| ||| || | || || |||||| || ||
Sbjct 230 AGACGGGA-AGATCACTACGAAGGAGCTGAACGAGTCATTCAAGAA-CCTCGGTATCATA 287
Query 128 CATCCCCGACA-AGGAGTTGACTCAAATGATCGAGAAGATCGACGTGAATGGTGACGGGT 186
|| ||||| | | || | || ||||| ||| | |||||||| || ||||||||||| |
Sbjct 288 -ATACCCGA-AGACGAACTAACACAAATTATCCAAAAGATCGATGTTAATGGTGACGGTT 345
Query 187 GCGTGGACATAGACGAGTTTGGTGAGCTTTACAAGACGATAAT-G--GACGAGGAAGACG 243
| || ||||| || |||||||| ||||| |||||||||||||| | || || || ||||
Sbjct 346 GTGTTGACATTGAAGAGTTTGGAGAGCTCTACAAGACGATAATGGTAGAAGATGAGGACG 405
Query 244 A---AGAAGAAGAGGACATGAAGGAAGCTTTCAATGTGTTTGATCAGAATGGAGATGGGT 300
| || |||||| || ||||||||||| ||||| || ||||||| ||| ||||||||||
Sbjct 406 AGGTAGGAGAAGAAGATATGAAGGAAGCGTTCAACGTATTTGATCGGAACGGAGATGGGT 465
Query 301 TTATAACCGTGGATGAATTGAAGGCGGTTTTGTCTTCCTTGGGGCTCAAACAAGGTAAGA 360
||||||| |||||||||||||| |||||||| ||||||||||| ||||| ||||||||||
Sbjct 466 TTATAACGGTGGATGAATTGAAAGCGGTTTTATCTTCCTTGGGACTCAAGCAAGGTAAGA 525
Query 361 CCTTGGATGATTGTAAGAAGATGATAAAGCAAGTGGATGTTGATGGTGATGGTAGGGTTA 420
||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 526 CCTTGGAGGAATGTAGGAAGATGATAATGCAAGTGGATGTTGATGGTGATGGTAGGGTTA 585
Query 421 ACTACAACGAGTTTAGACAAATGATGAAAG-GCGGTGG-TTTT--AGTTCTTTGTAGCTA 476
| |||| ||||||||||||||||||||| | ||| | |||| || |||||| ||||
Sbjct 586 ATTACATGGAGTTTAGACAAATGATGAAAAAG-GGTCGCTTTTTTAGCTCTTTG-AGCTG 643
Query 477 ATTAATATGttttttt 492
|| |||| |||||||
Sbjct 644 AT-AATAACTTTTTTT 658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23559814943
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5