BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919306
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06000.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 2117 0.0
AT1G06002.1 | Symbols: | Potential natural antisense gene, loc... 1351 0.0
> AT1G06000.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr1:1820308-1821894 REVERSE LENGTH=1587
Length=1587
Score = 2117 bits (1146), Expect = 0.0
Identities = 1280/1345 (95%), Gaps = 8/1345 (1%)
Strand=Plus/Plus
Query 1 AGAAAGaaaaaaa-aaCACATCATGACGAC--C-ACAACGAAGAAGCCGCACGTTCTGGT 56
||||||||||||| | || |||||||| || | ||||||||||||||||||||||||||
Sbjct 72 AGAAAGAAAAAAACATCA-ATCATGACAACAACAACAACGAAGAAGCCGCACGTTCTGGT 130
Query 57 CATACCGTTTCCACAGTCCGGTCACATGGTTCCACATCTTGACCTCACTCATCAGATTCT 116
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 131 GATACCGTTTCCACAATCCGGTCACATGGTTCCACATCTTGACCTCACGCATCAGATTCT 190
Query 117 TCTCCGTGGAGCCACCGTCACTGTCCTCGTCACACCCAAAAACTCTTCCTATCTCGATTC 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 191 TCTCCGTGGAGCCACCGTCACTGTCCTCGTCACACCCAAAAACTCTTCCTATCTCGATGC 250
Query 177 TCTCCGTTCACTTCACTCGCCGGAACACTTCAAAACCCTAATCCTTCCTTTTCCTTCTCA 236
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 251 TCTCCGTTCTCTTCACTCCCCGGAACACTTCAAAACCCTAATCCTTCCTTTTCCTTCTCA 310
Query 237 CCCTTGTATACCTTCCGGTGTCGAAACTCTCCAGCAACTTCCTCTCGAAGCTATAGTTCA 296
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 311 CCCTTGTATACCTTCCGGTGTCGAATCTCTCCAGCAACTTCCTCTCGAAGCTATAGTTCA 370
Query 297 TATGTTTGAAGCTCTCTCTCGTCTCCACGACCCTCTCGTTGACTTTCTCAGCCGTCAACC 356
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CATGTTTGATGCTCTCTCTCGTCTCCACGACCCTCTCGTTGACTTTCTCAGCCGTCAACC 430
Query 357 ACCGTCGGATCTCCCCGACGCTATCCTTGGAAGCTCATTTCTCAGCCCTTGGATTAACAA 416
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 431 ACCGTCGGATCTCCCCGACGCCATCCTAGGAAGCTCATTTCTCAGCCCTTGGATTAACAA 490
Query 417 AGTAGCTGATGCTTTCTCTATTAAGTCCATTTGTTTCTTACCCATCAATGCTCATTCGAT 476
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 491 AGTAGCTGATGCTTTCTCTATTAAGTCCATTAGTTTCTTACCCATCAATGCTCATTCGAT 550
Query 477 CTCCGTCATGTGGGCTCAAGAAGATAGAAGCTTCTTCAACGATCTCGAGACTGCCACAAC 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 CTCCGTCATGTGGGCTCAAGAAGATAGAAGCTTCTTCAACGATCTCGAGACTGCCACAAC 610
Query 537 GGAAAGCTACGGGCTCGTCGTCAACACTTTCTACGAACTCGAGCCTCAGTTTGTAGAAAC 596
||||||||||||||||||| |||||| ||||||||| ||||||||| |||||||||||||
Sbjct 611 GGAAAGCTACGGGCTCGTCATCAACAGTTTCTACGACCTCGAGCCTGAGTTTGTAGAAAC 670
Query 597 TGTTAAAACACGTTTCCTGAATCACCACCGTATCTGGACTGTCGGACCGTTGCTCCCCTT 656
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 671 TGTTAAAACACGTTTCCTGAATCACCACCGTATATGGACCGTCGGACCGTTGCTCCCCTT 730
Query 657 TAAAGCCGGCGTTGACCGTGGCGGGCAAAGCTCAATCCCGCCGGAGAAAGTCTCGGCATG 716
|||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct 731 TAAAGCTGGCGTTGACCGTGGCGGACAAAGCTCAATCCCGCCGGCGAAAGTCTCGGCTTG 790
Query 717 GTTAGATTCGTGTCCCGAGGATAACTCCGTCGTTTACATCGGTTTTGGGAGCCAGATCCG 776
|||||||||||| |||||||||||||||||||| ||| |||||||||| |||||||||||
Sbjct 791 GTTAGATTCGTGCCCCGAGGATAACTCCGTCGTATACGTCGGTTTTGGAAGCCAGATCCG 850
Query 777 GCTGACGGCTGAGCAAACGGCTGCTTTAGCGGCGGCGTTGGAGAAAAGTGGTGTGCGTTT 836
||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 851 GCTCACGGCGGAGCAAACAGCTGCTTTAGCGGCGGCGTTGGAGAAAAGCAGTGTGCGTTT 910
Query 837 CATATGGGCGGTGAGGGACGCAGCTAAAAAGGTGAACTCCAGCGATAACTCCGGCGAGGA 896
||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 911 CATATGGGCGGTGAGAGACGCAGCTAAGAAGGTGAACTCCAGCGATAACTCCGTTGAGGA 970
Query 897 AGATGTGATTCCGGCGGGATTTGAAGAGAGAGTGAAGGAGAAAGGACTTGTGATAAGAGG 956
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 971 AGATGTGATCCCGGCGGGATTTGAAGAGAGAGTGAAGGAGAAAGGACTCGTGATAAGAGG 1030
Query 957 ATGGGCCCCACAAACTATGATTCTTGAGCATCGAGCCGTTGGATCTTACCTAACTCATTT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 ATGGGCCCCACAAACTATGATTCTTGAGCATCGAGCCGTTGGATCTTACCTAACTCATTT 1090
Query 1017 GGGATGGGGTTCGGTTCTAGAAGGAATGGTCGGAGGAGTTCTGTTGCTTGCGTGGCCGAT 1076
||| |||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1091 GGGTTGGGGTTCGGTTCTGGAAGGAATGGTCGGAGGAGTTATGTTGCTAGCGTGGCCGAT 1150
Query 1077 GCAAGCAGACCACTTCTTCAACACGACGCTGGTCGTTGATAAACTAAAAGCCGCAGTGCG 1136
|||||||||||| ||||| ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1151 GCAAGCAGACCATTTCTTTAACACGACGCTCATCGTTGATAAACTAAGAGCCGCAGTGCG 1210
Query 1137 AGTTGGAGAGAACAGAGACTCGGTTCCTGACTCGGACGAGCTCGCTAGGGTTTTGGCTGA 1196
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1211 AGTTGGAGAGAACAGAGACTCGGTTCCTGACTCGGACAAGCTCGCTAGGATTTTGGCTGA 1270
Query 1197 GTCCGTGAGAGAGGACTTGCCGGAGAGAGTTACGTTGATGAGGCTGAGGGAGAAAGGC-A 1255
||| | ||||||||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 1271 GTCGGCGAGAGAGGACTTGCCGGAGAGAGTTACGTTGATGAAGCTGAGGGAGAAAG-CTA 1329
Query 1256 TGGAGGCCATTAAAGAAGGTGGGAGCTCTTACAAGAGCTTGGATGAGCTCGTCGCAGAGA 1315
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1330 TGGAGGCCATTAAAGAAGGTGGGAGCTCTTACAAGAACTTGGATGAGCTCGTTGCAGAGA 1389
Query 1316 TGTGTGTGTAATAAAATATTCTCTT 1340
||||| ||||||||| ||| |||||
Sbjct 1390 TGTGTTTGTAATAAA-TATCCTCTT 1413
> AT1G06002.1 | Symbols: | Potential natural antisense gene, locus
overlaps with AT1G06000 | chr1:1820977-1821918 FORWARD
LENGTH=942
Length=942
Score = 1351 bits (731), Expect = 0.0
Identities = 810/848 (96%), Gaps = 5/848 (1%)
Strand=Plus/Minus
Query 1 AGAAAGaaaaaaa-aaCACATCATGACGAC--C-ACAACGAAGAAGCCGCACGTTCTGGT 56
||||||||||||| | || |||||||| || | ||||||||||||||||||||||||||
Sbjct 847 AGAAAGAAAAAAACATCA-ATCATGACAACAACAACAACGAAGAAGCCGCACGTTCTGGT 789
Query 57 CATACCGTTTCCACAGTCCGGTCACATGGTTCCACATCTTGACCTCACTCATCAGATTCT 116
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 788 GATACCGTTTCCACAATCCGGTCACATGGTTCCACATCTTGACCTCACGCATCAGATTCT 729
Query 117 TCTCCGTGGAGCCACCGTCACTGTCCTCGTCACACCCAAAAACTCTTCCTATCTCGATTC 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 728 TCTCCGTGGAGCCACCGTCACTGTCCTCGTCACACCCAAAAACTCTTCCTATCTCGATGC 669
Query 177 TCTCCGTTCACTTCACTCGCCGGAACACTTCAAAACCCTAATCCTTCCTTTTCCTTCTCA 236
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 668 TCTCCGTTCTCTTCACTCCCCGGAACACTTCAAAACCCTAATCCTTCCTTTTCCTTCTCA 609
Query 237 CCCTTGTATACCTTCCGGTGTCGAAACTCTCCAGCAACTTCCTCTCGAAGCTATAGTTCA 296
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 608 CCCTTGTATACCTTCCGGTGTCGAATCTCTCCAGCAACTTCCTCTCGAAGCTATAGTTCA 549
Query 297 TATGTTTGAAGCTCTCTCTCGTCTCCACGACCCTCTCGTTGACTTTCTCAGCCGTCAACC 356
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 CATGTTTGATGCTCTCTCTCGTCTCCACGACCCTCTCGTTGACTTTCTCAGCCGTCAACC 489
Query 357 ACCGTCGGATCTCCCCGACGCTATCCTTGGAAGCTCATTTCTCAGCCCTTGGATTAACAA 416
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 488 ACCGTCGGATCTCCCCGACGCCATCCTAGGAAGCTCATTTCTCAGCCCTTGGATTAACAA 429
Query 417 AGTAGCTGATGCTTTCTCTATTAAGTCCATTTGTTTCTTACCCATCAATGCTCATTCGAT 476
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 428 AGTAGCTGATGCTTTCTCTATTAAGTCCATTAGTTTCTTACCCATCAATGCTCATTCGAT 369
Query 477 CTCCGTCATGTGGGCTCAAGAAGATAGAAGCTTCTTCAACGATCTCGAGACTGCCACAAC 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 CTCCGTCATGTGGGCTCAAGAAGATAGAAGCTTCTTCAACGATCTCGAGACTGCCACAAC 309
Query 537 GGAAAGCTACGGGCTCGTCGTCAACACTTTCTACGAACTCGAGCCTCAGTTTGTAGAAAC 596
||||||||||||||||||| |||||| ||||||||| ||||||||| |||||||||||||
Sbjct 308 GGAAAGCTACGGGCTCGTCATCAACAGTTTCTACGACCTCGAGCCTGAGTTTGTAGAAAC 249
Query 597 TGTTAAAACACGTTTCCTGAATCACCACCGTATCTGGACTGTCGGACCGTTGCTCCCCTT 656
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 248 TGTTAAAACACGTTTCCTGAATCACCACCGTATATGGACCGTCGGACCGTTGCTCCCCTT 189
Query 657 TAAAGCCGGCGTTGACCGTGGCGGGCAAAGCTCAATCCCGCCGGAGAAAGTCTCGGCATG 716
|||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct 188 TAAAGCTGGCGTTGACCGTGGCGGACAAAGCTCAATCCCGCCGGCGAAAGTCTCGGCTTG 129
Query 717 GTTAGATTCGTGTCCCGAGGATAACTCCGTCGTTTACATCGGTTTTGGGAGCCAGATCCG 776
|||||||||||| |||||||||||||||||||| ||| |||||||||| |||||||||||
Sbjct 128 GTTAGATTCGTGCCCCGAGGATAACTCCGTCGTATACGTCGGTTTTGGAAGCCAGATCCG 69
Query 777 GCTGACGGCTGAGCAAACGGCTGCTTTAGCGGCGGCGTTGGAGAAAAGTGGTGTGCGTTT 836
||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 68 GCTCACGGCGGAGCAAACAGCTGCTTTAGCGGCGGCGTTGGAGAAAAGCAGTGTGCGTTT 9
Query 837 CATATGGG 844
||||||||
Sbjct 8 CATATGGG 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66264719400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5