BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919311
Length=983
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06050.1 | Symbols: | Protein of unknown function (DUF1336)... 1435 0.0
> AT1G06050.1 | Symbols: | Protein of unknown function (DUF1336)
| chr1:1830605-1832555 REVERSE LENGTH=1294
Length=1294
Score = 1435 bits (777), Expect = 0.0
Identities = 918/983 (93%), Gaps = 22/983 (2%)
Strand=Plus/Plus
Query 7 AGGTTTTCACAAGATATGGGTGGCTCTGTTGGTGAAGAAACTGAGCCAGAATGGATTAAG 66
|||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 217 AGGTTTTCGCAAGATATGGCTGGCTCTGTTGGTGAGGAAACTGAGCCAGAATGGATTAAG 276
Query 67 AGAGTGAAACTAGAGGGTGCTGTTCCGTGTCTTCAGCC--A-GACAACTGCCAAAATGGT 123
||||||||| ||||||| |||||||| |||||| |||| | ||||||||| ||||||||
Sbjct 277 AGAGTGAAATTAGAGGGAGCTGTTCCATGTCTTAAGCCAGACGACAACTGCAAAAATGGT 336
Query 124 TGGACTACGCCATCTCCTGACACATTTATGGTTAGAGGACCAAAGTATTTCTCTGACAAT 183
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 TGGACGACGCCATCTCCTGACACATTTATGGTTAGAGGACCAAAGTATTTCTCTGACAAA 396
Query 184 GTTAAAG-TTCCTGCTGGTGATTTCCTTCTAAAGCCTCTGGGTTTTGATTGGATCAAAGG 242
||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 397 GTT-AAGATACCTGCTGGTGATTTCCTTCTAAAGCCTCTGGGTTTTGATTGGATTAAAGG 455
Query 243 TCCTACAAAGCTTTCTGAGATCCTGAGTTACCCGAGCAGCAGAATCAGGAAAGTTATCGA 302
||||| |||||||||||||||||||||||| || |||||| |||||||||||||||||||
Sbjct 456 TCCTAAAAAGCTTTCTGAGATCCTGAGTTATCCAAGCAGCCGAATCAGGAAAGTTATCGA 515
Query 303 TGAGGAGTTTCAAGCAGATGGAACTAAGCCTTTTGTATGGGCATTCAATCTCCAGCTTCC 362
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 516 TGAGGAGTTTCAAAAAGATGGAACTAAGCCTTTTGTCTGGGCATTCAATCTCCAGCTTCC 575
Query 363 CCACAAAGACAATTACAGTGCTGTGGCTTACTTTGTTGCCACAGAGCCTATCCTTGAAGG 422
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 576 TCACAAAGACAATTACAGTGCTGTGGCTTACTTTGTTACCACAGAGCCTATCCTTGAAGG 635
Query 423 CTCCCTGATGGATCGGTTTCTGAAAGGAGATGATGTGTTCAAGAAATCAAGGCTTAAACT 482
||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||
Sbjct 636 CTCCCTGATGGATCGGTTTTTGAAAGGAGATGATGGGTTCAAGAAATCGAGGCTTAAACT 695
Query 483 GATTGCAAACATTGTCAAAGGCCCTTGGATTGTAAGAAAAGCTGTTGGAGAGCAAGCAAT 542
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 696 GATTGCAAACATTGTCAAAGGCCCTTGGATTGTTAGAAAAGCTGTTGGAGAGCAAGCGAT 755
Query 543 ATGTGTGATTGGACGTGCACTGTCTTGCAAATATGTTTCAGGAGAAAACTTTGTGGAGAT 602
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 756 CTGTGTGATTGGACGTGCACTCTCTTGCAAATATGTTTCAGGGGAAAACTTTGTGGAGAT 815
Query 603 TGATGTTGATATCGGTTCTTCAATGGTCGCTAGTGCCATTGTTCATCTCGCATTTGGTTA 662
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 816 TGATGTCGATATTGGTTCTTCAATGGTCGCTAGTGCCATTGTTCATCTCGCATTTGGCTA 875
Query 663 CGTCACAACATTGACCGTTGATCTTGCGTTCCTCATTGAGAGTCAGACGGAAGCAGAGCT 722
||| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 876 CGTTACTACATTGACAGTTGATCTTGCGTTCCTCATTGAGAGTCAGACCGAAGCAGAGCT 935
Query 723 TCCAGAAAAGCTACTAGGAGCTGTGAGATTCTCTGAGCTGCAGACCGAGTCAGCCA-AGT 781
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 936 TCCAGAAAAGCTACTAGGAGCTGTGAGATTCTCTGAGCTGCAGACCGAGTCAGCCACA-T 994
Query 782 TTATCGAACTG-----A-GCACCAGTAATGAGCGGTGGGATCAAACTACCTCAGAGCGGT 835
|||||||||| | ||||||||||||| | ||||||||||||||||||||||||||
Sbjct 995 CTATCGAACTGTCCTCAAGCACCAGTAATGACCAGTGGGATCAAACTACCTCAGAGCGGT 1054
Query 836 CGAGCTGGTGGAAATCGATTGGTAATGGATTCTCTAATCTGCTTAACCAAGATACAGCCA 895
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 1055 CGAGCTGGTGGAAATCGATTGGAAATGGATTCTCTAATCTGCTTAATCAAGATACGGCCA 1114
Query 896 ACATGAACAATACTTCTCATGGGGAAATCCAGAACCAGAAGGATGAACATGTACAACAGA 955
||||||||||||||||||||||||| |||||||| | | ||||||||||||| ||
Sbjct 1115 ACATGAACAATACTTCTCATGGGGACATCCAGAA---G--G-ATGAACATGTACA---GA 1165
Query 956 AGCAGTAAGTGTTTTGGGAGTTA 978
|||||||||||||||||||||||
Sbjct 1166 AGCAGTAAGTGTTTTGGGAGTTA 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48124312826
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5