BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919325

Length=206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G06149.1 | Symbols: CPuORF8 | conserved peptide upstream ope...   233    4e-61
  AT1G06150.1 | Symbols: EMB1444 | basic helix-loop-helix (bHLH) ...   233    4e-61


> AT1G06149.1 | Symbols: CPuORF8 | conserved peptide upstream open 
reading frame 8 | chr1:1868989-1873718 REVERSE LENGTH=2968
Length=2968

 Score =  233 bits (126),  Expect = 4e-61
 Identities = 128/129 (99%), Gaps = 0/129 (0%)
 Strand=Plus/Plus

Query  74   GAAAGGAATGGGCACTAGGCAGTATTCACTGGGAGAAGTAGGGCCACCAATAAATCCGAG  133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  248  GAAAGGAATGGGCACTAGGCAGTATTCACTGGGAGAAGTAGGGCCACCAATAAATCCGAG  307

Query  134  AGCTGGATTGCGAAGAGAACAAGCTGGTAGAGGTTCATACAGAGGTAGTTAGTAGATTCG  193
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  308  AGCTGGATTGCGAAGGGAACAAGCTGGTAGAGGTTCATACAGAGGTAGTTAGTAGATTCG  367

Query  194  TAGCTCATC  202
            |||||||||
Sbjct  368  TAGCTCATC  376


> AT1G06150.1 | Symbols: EMB1444 | basic helix-loop-helix (bHLH) 
DNA-binding superfamily protein | chr1:1867015-1873718 REVERSE 
LENGTH=4607
Length=4607

 Score =  233 bits (126),  Expect = 4e-61
 Identities = 128/129 (99%), Gaps = 0/129 (0%)
 Strand=Plus/Plus

Query  74   GAAAGGAATGGGCACTAGGCAGTATTCACTGGGAGAAGTAGGGCCACCAATAAATCCGAG  133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  248  GAAAGGAATGGGCACTAGGCAGTATTCACTGGGAGAAGTAGGGCCACCAATAAATCCGAG  307

Query  134  AGCTGGATTGCGAAGAGAACAAGCTGGTAGAGGTTCATACAGAGGTAGTTAGTAGATTCG  193
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  308  AGCTGGATTGCGAAGGGAACAAGCTGGTAGAGGTTCATACAGAGGTAGTTAGTAGATTCG  367

Query  194  TAGCTCATC  202
            |||||||||
Sbjct  368  TAGCTCATC  376



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9205147233


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5