BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919332
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06190.1 | Symbols: | Rho termination factor | chr1:1892273... 1770 0.0
> AT1G06190.1 | Symbols: | Rho termination factor | chr1:1892273-1894148
REVERSE LENGTH=1470
Length=1470
Score = 1770 bits (958), Expect = 0.0
Identities = 1149/1237 (93%), Gaps = 30/1237 (2%)
Strand=Plus/Plus
Query 3 TGCTCCTGAAGTCTGTTCATGGCGATGTCGGGAACTTTCCATTTGACTTCTGACTATGTC 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 TGCTCCTGAAGTCTGTTCATGGCGATGTCGGGAACTTTCCATTTGACTTCTGACTATGTC 112
Query 63 CCTGGTTACACACTTTCAGACAGCCGTTCCTTCTCTACCTCTGCTGTTTCAAGAAGAGCA 122
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||
Sbjct 113 CCTGGTTACACACTTTCAGACAGCCGTTGCTTCTTTAACTCTGCTGTTTCAAGAAGAACA 172
Query 123 CTTGCCATCTTACCTTGCTCTTCCTGTCTGGATCACAAGAATGGGCGTCTGAAATCTGTC 182
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 173 CTTGCCATATTACCTTGCTCTTCCTGTCTCGATCACAAGAATGGGCGTCTGAAATCTGTC 232
Query 183 TCCGATAAGAA-TGCTTTTCTATGCCGAGCAAGTTCTGGCGGCTATAGGAGAAATCCTGA 241
|| ||| ||| | ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 233 CCCAATA-GAAGTTCTTTTGTGTGCCGAGCAAGTTCTGGCGGCTATAGGAGAAATCCTGA 291
Query 242 TTTCTCAAGACTTAATAAGCATGGTTTCCGGGGGAACAACAGGCAAAGTGAAGGGAGAGA 301
|||||||||||||||||||||||||| |||||| |||||||||||||| | |||||||||
Sbjct 292 TTTCTCAAGACTTAATAAGCATGGTTACCGGGGAAACAACAGGCAAAGCGGAGGGAGAGA 351
Query 302 CGATCTCGATATCGAAAACTCTGATATGTTGTCTTCGAGAAATGGGCCTTTATTCT-CTC 360
||| | ||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 352 AGATTTTGATATCGAAAACTCTGATATGTTGTCTTCAAGAAATGGGCCTTTATTCAAC-C 410
Query 361 TGTCTAGCTCCCCCAAATTCCAAGCTATATCATCCCCTGGACCAAGAGAGAAAGAGATAG 420
||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 411 TGTCTAGTTCCCCCAAATTCCAAGCTACCTCATCCCCTGGACCTAGAGAGAAAGAGATCG 470
Query 421 TGGAGCTTTTCAGAAAGGTTCAAGCTCAGCTCCGAGCTCGTGCTGCAGCaaagaaagaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TGGAGCTTTTCAGAAAGGTTCAAGCTCAGCTCCGAGCTCGTGCTGCAGCAAAGAAAGAAG 530
Query 481 aaaaaaagattgaagaatcttctaaagggcagggaaaagaaagtgaaaCTGTTGACTCCC 540
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 531 AAAAAAAGATTGAAGAAGCTTCTAAAGGGCAGGGAAAAGAAAGTGAAACTGTTGACTCTC 590
Query 541 TTCTTAAGTTACTAAGGAAACACTCGGGAGAGCAAAGCAAGAAGCAAGTTAGCAAATTTA 600
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 591 TTCTTAAGTTACTAAGGAAGCACTCGGGAGAGCAAAGCAAGAGGCAAGTTAGCAAATTTA 650
Query 601 GCAGCCAGGGAGAAGTACAAGAAGATACTGTCGACAAACAAAATCGCAATGGAAATCTTG 660
||||||||||||||||||||| ||||||||| ||||||||| |||||| ||||||||||
Sbjct 651 GCAGCCAGGGAGAAGTACAAGGAGATACTGTTGACAAACAAGATCGCACCGGAAATCTTG 710
Query 661 TCAATTCAGGGAACAAAGATAATAATGCATCATCCTTTACCAGACCAACATCAAGCTTCA 720
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TCACTTCAGGGAACAAAGATAATAATGCATCATCCTTTACCAGACCAACATCAAGCTTCA 770
Query 721 GAAGAAAGTCGCCAGTACCAAGATCTAAATCACCGCCAGCTTATTCTAGCGAGGCAACTT 780
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 771 GAAGAAAGTCGCCAGTACCAAGATCTCAATCACCGCCAGCTTATTCTAGCGAGGCAACTT 830
Query 781 TTGATCAATCATCGAGTTACAGCGTAACCTGGACCCAGAAGAAGGATACAGTAGAGTTGC 840
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 831 TTGATCAATCATCAAGTTACAGTGTAACCTGGACCCAGAAGAAGGATACAGTAGAGTTGC 890
Query 841 AGGATGAGCCTGAACATGAGCCTGAGAATGAGCATGAGCCTGAGTACGAGCACGAACCTG 900
| |||||||||||||||||||||| | |||||||||||| | | |||| | ||
Sbjct 891 ATGATGAGCCTGAACATGAGCCTGCGTATGAGCATGAGC---A-T--GAGC-C-----TG 938
Query 901 AAAATGAGTCAGAACCTGGGCCTGTGACAACTATGCTTGAAACAGAGTCAGAGCTGAAGC 960
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
Sbjct 939 AAAATGAGTCAGAACCTGGGCCTGTGACAACTATGCTTGAACCAGATTCAGAGCTGAAAC 998
Query 961 CAGATTCATCATCATTGTT-TCAAGAGGAGGAGGATGATGAAGTGACTTT--A-G----A 1012
|||| ||||||||||| || ||||||||||||||||||||| || ||||| | | |
Sbjct 999 CAGAGTCATCATCATT-TTATCAAGAGGAGGAGGATGATGATGTTACTTTTGATGTGTTA 1057
Query 1013 T----G-ATGACGGTATTTTAGATGTGTTTTCAGATGATGATGAGTCTCACGATGATGCT 1067
| | |||| ||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1058 TCACAGGATGATGGTATTTTAGATGTGTTATCAGATGATGATGAGTCTCTCGATGATGCT 1117
Query 1068 GATGAAGATAGTGATGAAGCTGAGGAAGAAGCCGTGAAAGACTTGAGTAAACTGAAGCTG 1127
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1118 GATGAAGATAGTGATGAAGCTGAGGAAGAAGCCGTGAAAGACTTGAGTGAATTGAAGCTG 1177
Query 1128 ATGGAACTTAGAGGCATAGCAAAGTCACGGGGACTAAAAGGGTTTTCAAAGATGAAGAAA 1187
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1178 GTCGAACTTAGAGGCATAGCAAAGTCACGGGGACTAAAAGGGTTGTCAAAGATGAAGAAA 1237
Query 1188 GCCGAACTAGTGGAGTTGCTTGGTAGTAATTCTAGCT 1224
|||||| |||||||||||||||||||| |||| ||||
Sbjct 1238 GCCGAATTAGTGGAGTTGCTTGGTAGTGATTCCAGCT 1274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61244664900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5