BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919333
Length=659
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06200.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family p... 1027 0.0
AT2G31140.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family p... 431 4e-120
> AT1G06200.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family
protein | chr1:1894336-1896935 REVERSE LENGTH=972
Length=972
Score = 1027 bits (556), Expect = 0.0
Identities = 626/660 (95%), Gaps = 4/660 (1%)
Strand=Plus/Plus
Query 1 AAAAGTCG-ATAGCACTCAACGATGGCATCCATCACGAATTATGTCCGATACATGGCTCA 59
|||||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 63 AAAAGTCGCA-AGCATTCAACGATGGCTTCCATCACGAATTATGTCCGATACATGGCTCA 121
Query 60 CAAGCTCGAGTACTCTCTCACTCTCAGCCTCAAGAAACATACTAGAGAGAAGCTCAGTGA 119
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 122 CAAGCTCGAGTACTCTCTCACTCTCAGCCTTAAGAAACATACTAGAGAGAAGCTCAGTGA 181
Query 120 CCGGGAACTCCTTGG-GATAGTCATGAAGAATCTATTCTATGGAAGGATAACCTACTTAC 178
|||||||||| |||| | |||||||||||||||||||||||||||| |||| ||||||||
Sbjct 182 CCGGGAACTCTTTGGTG-TAGTCATGAAGAATCTATTCTATGGAAGAATAAGCTACTTAC 240
Query 179 ACTCGGATAAAGGACAAGAGATGGCCCCAACTATGGGAACAAATGAAAACACGCTACTTG 238
||||||| |||||| |||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 241 ACTCGGACAAAGGAAAAGAGATGGCCCCAACCATGGGAACAAATGAAAGCACGCTACTTG 300
Query 239 TCCGTAAGCTGCCAGTTGTTGACACAAGGTACATTTTCGTTGGGGATGCTGTTGTCTTCA 298
|||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 301 TCCGTAAGCTACCAGTTGTTGATACAAGGTACATTTTCGTAGGGGATGCTGTTGTCTTGA 360
Query 299 AGGACCCGAATGaaaaaaaGAAGTATATAGTCAGAAGATTAGCAGCTTTAGAGGGATCTG 358
||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 361 AGGACCCGAATGAAACAAATAAGTATATAGTCAGAAGACTAGCAGCTTTAGAGGGATCTG 420
Query 359 AAATGGTATCAAGTGATGGGAAAGATGAGCCTTTTGTTCTCGAAAAGGATCAGTGCTGGG 418
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAATGGTATCAAGTGATGAGAAAGATGAGCCTTTTGTTCTCGAAAAGGATCAGTGCTGGG 480
Query 419 TCGTAGCTGAGAACCAAGAGATGAAATCTAAGGAAGCATATGATAGTCGAACATTTGGTC 478
|||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 481 TCGTTGCTGAGAATCAAGAGATGAAATCTAAAGAAGCATATGATAGTCGAACATTTGGTC 540
Query 479 CGATTTCCATGGCGGACATAGTAGGAAGAGCTATATATTGTCTGAGGACAGCGGTGGATC 538
| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 541 CAATTTCAATGGCGGACATAGTGGGAAGAGCTATATATTGTCTGAGGACAGCAGTGGATC 600
Query 539 ATGGTCCAGTAAGCAACAGTGAATTTGCCATGGAAGAGGATTCTCCAATCCTGGCGGTAG 598
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 601 ATGGTCCAGTAAGCAACAGTGAATTTGCCATGGACGAGGATTCCCCAATCCTGGCGGTAG 660
Query 599 AACTTGACGTGGATGAATTGGCTAAAGACCACAAGGCGTAATAACGAAGAACCTTTCTTG 658
||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||
Sbjct 661 AACTTGACGTGGATGAATTGGCTAAAGGCCACAAGGCGTCATAATGAAGAACCTTTCTTG 720
> AT2G31140.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family
protein | chr2:13269926-13271811 FORWARD LENGTH=972
Length=972
Score = 431 bits (233), Expect = 4e-120
Identities = 496/623 (80%), Gaps = 18/623 (3%)
Strand=Plus/Plus
Query 22 ATGGCATCCATCACGAATTATG-TCCGATACATGGCTCACAAGCTCGAGTACTCTCTCAC 80
||||| || ||| ||| || | |||||||||||||||||||||||||||| || |||||
Sbjct 163 ATGGCTTCAATCTCGACTT-GGTTCCGATACATGGCTCACAAGCTCGAGTATTCCCTCAC 221
Query 81 TCTCAGCCTCAAGAAACATACTAG-AGAGAAGCTCAGTGACCGGGAACTCCTTGGGATAG 139
|||||| ||||||| |||| || | | || || |||||||||||||| || |||
Sbjct 222 TCTCAGTCTCAAGAGTCATAGGAGTA-ATAAACTGAGTGACCGGGAACTTATTCAAATAA 280
Query 140 TCATG-AAGAATCTATTCTAT-GGAAGGATAACCTACTTACACTCGGATAAAGGACAAGA 197
|| || |||||||| |||||| |||| |||||||||||||||||||||||||||| |||
Sbjct 281 TC-TGCAAGAATCTGTTCTATGGGAA-AATAACCTACTTACACTCGGATAAAGGACCAGA 338
Query 198 GATGGCCCCAACTATGGGAACAAATGAAAACACGCTACTTGTCCGTAAGCTGCCAGTTGT 257
||| | ||||| ||| | ||||||||||||| || ||| | |||||| | ||| |||
Sbjct 339 AATGTCACCAACCATGACAGCAAATGAAAACACACTTCTTATTCGTAAGATACCAATTGC 398
Query 258 TGACACAAGGTACATTTTCGTTGGGGATGCTGTTGTCTTCAAGGACCCGAATGaaaaaaa 317
| | || |||| | ||| |||| |||||||| ||||| ||||| || || || | |
Sbjct 399 TAATACCAGGTTTGTATTCATTGGAGATGCTGTCGTCTTAAAGGATCCAAACGATTCAGA 458
Query 318 GAAGTATATAGTCAGAAGATTAGCAGCTTTAGAGGGAT-CTGAAATGGTATCAAGTGATG 376
|||||| | || ||||||||||||||| |||| |||| | ||||||||||| ||||||
Sbjct 459 TAAGTATCTGGTAAGAAGATTAGCAGCTGTAGAAGGATTC-GAAATGGTATCGGGTGATG 517
Query 377 GGAAAGATGAGCCTTTTGTTCTCGAAAAGGATCAGTGCTGGGTCGTAGCTGAGAACCAAG 436
||||| |||||||||||||| || ||| ||||||| ||||| |||||| ||||| |
Sbjct 518 AAAAAGAGGAGCCTTTTGTTCTTGAGAAGAATCAGTGTTGGGTAACAGCTGAAAACCAGG 577
Query 437 AGATGAAATCTAAGGAAGCATATGATAGTCGAACATTTGGTCC-GATTTCCATGGCGGAC 495
|| | ||| |||||||||||||||||||| ||||||||||||| | |||| | || |||
Sbjct 578 AGCTCAAAGCTAAGGAAGCATATGATAGTAGAACATTTGGTCCAG-TTTCAACAGCAGAC 636
Query 496 ATAGTAGGAAGAGCTATATATTGTCTGAGGACAGCGGTGGATCATGGTCCAGTAAGCAAC 555
|| || |||||||||||||| |||||||| ||||| || ||||| || || || | |||
Sbjct 637 ATTGTTGGAAGAGCTATATACTGTCTGAGAACAGCCGTCGATCACGGACCTGTTCGAAAC 696
Query 556 AGTGAATTTGCCATGGAAGAGGATTCTCCAATCCTGGCGGTAGAACTTG-ACGTGGATGA 614
|| || ||| |||| | | ||||||||||||||||| || ||| ||| ||||||| ||
Sbjct 697 AGCCAAACTGCAATGGGACAAGATTCTCCAATCCTGGCCGTGGAA-TTGGACGTGGACGA 755
Query 615 -ATTGGCTAAAGA-CCACAAGGC 635
|| |||||| || ||| |||||
Sbjct 756 GAT-GGCTAA-GAACCATAAGGC 776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31848449198
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5