BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919336
Length=292
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06225.1 | Symbols: CLE3 | CLAVATA3/ESR-RELATED 3 | chr1:190... 366 5e-101
> AT1G06225.1 | Symbols: CLE3 | CLAVATA3/ESR-RELATED 3 | chr1:1905975-1906226
FORWARD LENGTH=252
Length=252
Score = 366 bits (198), Expect = 5e-101
Identities = 235/253 (93%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 21 ATGGCAAGTCTCAAGTTATGGGTTTGTTTGGTCTTGCTTCTAGTACTCAAATTGACCTCG 80
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||
Sbjct 1 ATGGCAAGTCTCAAGTTATGGGTTTGTTTGGTCCTGCTTCTAGTACTCGAATTGACATCG 60
Query 81 GTGAACGAATGTAGACCTTTGGTTGCGGAAGAGAGCTTTTCTGGTTCAAGCCGTTTGAAA 140
||| |||||||| |||| |||||||| |||||||| |||||||||||||| |||||||||
Sbjct 61 GTGCACGAATGTCGACCATTGGTTGCCGAAGAGAGATTTTCTGGTTCAAGTCGTTTGAAA 120
Query 141 AAGATTAGACGTGAACTTTTTGAGAGGTTAAAAGAGCTTAAGGTGAGATCAGAAGGCGAA 200
||||| |||||||||||||||||||||||||||||| | |||| ||||||||||||||||
Sbjct 121 AAGATAAGACGTGAACTTTTTGAGAGGTTAAAAGAGATGAAGGGGAGATCAGAAGGCGAA 180
Query 201 -ATGACGATCCTTGGAGATACTCTTGACTCTAAGCGGCTTAGTCCCGGTGGTCCTGACCC 259
| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 GA-GACGATCCTTGGAAATACTCTTGACTCAAAGCGGCTTAGTCCCGGTGGTCCTGACCC 239
Query 260 AAGGCATCACTGA 272
||||||||||||
Sbjct 240 GAGGCATCACTGA 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13471756732
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5