BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919340
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06260.1 | Symbols: | Cysteine proteinases superfamily prot... 1796 0.0
AT1G06265.1 | Symbols: | other RNA | chr1:1914943-1917661 REVE... 736 0.0
> AT1G06260.1 | Symbols: | Cysteine proteinases superfamily protein
| chr1:1916430-1917585 FORWARD LENGTH=1051
Length=1051
Score = 1796 bits (972), Expect = 0.0
Identities = 1025/1051 (98%), Gaps = 1/1051 (0%)
Strand=Plus/Plus
Query 3 AAC-TTAAAACAAATAAAAATGCTGAATGTACTTAGAAATTCTAACCTGACCCTTGTCGT 61
||| || ||||||| ||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1 AACTTTTAAACAAACAAAAATGCTGAATGTACTTCGAAATTCTAACCTGACCCTTGCCGT 60
Query 62 TTTGATATGCTTTGTCTTGATAGCTTCAAAGCTATGTTCCGTCAATTCCTCTGTGTATGA 121
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 TTTGATTTGCTTTGTCTTGATAGCTTCAAAGCTATGTTCCGTCGATTCCTCTGTGTATGA 120
Query 122 CCCACACAAAACCCTGAAGCAGCGGTTCGAGAAGTGGCTTAAAACCCACAGCAAACTATA 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 CCCACACAAAACCCTGAAGCAGCGGTTCGAGAAGTGGCTTAAAACCCACAGCAAATTATA 180
Query 182 TGGAGGAAGGGATGAGTGGATGCTACGGTTTGGGATATACCAGTCTAACGTCCAATTGAT 241
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 181 TGGAGGAAGGGATGAGTGGATGCTACGGTTTGGGATATATCAGTCTAACGTCCAGTTGAT 240
Query 242 TGACTACATCAACTCCCTCCACTTGCCCTTTAAGCTAACGGATAACAGATTTGCAGACAT 301
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 241 TGACTACATCAACTCCCTCCACTTGCCCTTTAAGCTAACGGATAATAGATTTGCAGATAT 300
Query 302 GACCAATTCTGAGTTTAAGGCCCATTTTCTCGGGTTGAACACGTCTTCCTTGAGGTTACA 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GACCAATTCTGAGTTTAAGGCCCATTTTCTCGGGTTGAACACGTCTTCCTTGAGGTTACA 360
Query 362 CAAGAAGCAGAGACCAGTTTGTGACCCAGCAGGCAATGTCCCGGACGCTGTGGACTGGAG 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAAGAAGCAGAGACCAGTTTGTGACCCAGCAGGCAATGTCCCGGACGCTGTGGACTGGAG 420
Query 422 GACTCAAGGTGCTGTGACTCCTATCAGAAATCAAGGAAAATGCGGAGGTTGCTGGGCATT 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GACTCAAGGTGCTGTGACTCCTATCAGAAATCAAGGAAAATGCGGAGGTTGCTGGGCATT 480
Query 482 CTCTGCAGTAGCAGCTATTGAAGGCATCAACAAGATTAAAACAGGGAATTTAGTGTCTCT 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTCTGCAGTAGCAGCTATTGAAGGCATCAACAAGATTAAAACAGGGAATTTAGTGTCTCT 540
Query 542 CTCAGAACAACAACTCATAGATTGTGATGTCGGCACTTACAACAAAGGCTGTAGTGGCGG 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTCAGAACAACAACTCATAGATTGTGATGTCGGCACTTACAACAAAGGCTGTAGTGGCGG 600
Query 602 ATTAATGGAAACAGCCTTTGAATTCATCAAAAGCAATGGTGGACTCACCACCGAGACCGA 661
||||||||||||||| |||||||||||||||| ||||||||||||| |||| ||||||||
Sbjct 601 ATTAATGGAAACAGCATTTGAATTCATCAAAACCAATGGTGGACTCGCCACGGAGACCGA 660
Query 662 CTACCCATACACAGGCATAGAGGGTACCTGCGATCAAGAAAAAGCCAAAAATAAGGTAGT 721
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 661 CTACCCATACACAGGCATAGAGGGTACCTGCGACCAAGAAAAATCCAAAAATAAGGTAGT 720
Query 722 TACGATACAAGGATACCAAAAAGTAGCCCAGAACGAGGCGAGCCTACAAATCGCTGCAGC 781
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 721 TACGATACAAGGATACCAAAAGGTAGCCCAAAACGAGGCGAGCCTACAAATCGCTGCAGC 780
Query 782 TCAACAGCCAGTATCAGTTGGAATCGATGCTGGTGGGTTTATCTTTCAGCTCTACTCTTC 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 781 TCAACAGCCAGTATCAGTTGGAATCGATGCTGGTGGGTTTATCTTTCAGCTCTACTCCTC 840
Query 842 TGGTGTTTTCACAAGTTACTGTGGAACAAATCTCAACCATGGAGTGACTGTTGTTGGATA 901
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CGGTGTTTTCACAAATTACTGTGGAACAAATCTCAACCATGGAGTGACTGTTGTTGGATA 900
Query 902 TGGAGTAGAAGGCGATCAAAAGTACTGGATCGTAAAGAATTCATGGGGAACTGGCTGGGG 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TGGAGTAGAAGGCGATCAAAAGTACTGGATCGTAAAGAATTCATGGGGAACTGGCTGGGG 960
Query 962 TGAAGAAGGCTACATACGGATGGAGCGTGGTATAAGCGAAGACACGGGTAAATGTGGTAT 1021
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 961 TGAAGAAGGCTACATACGGATGGAGCGTGGTGTAAGTGAAGACACGGGTAAATGTGGTAT 1020
Query 1022 TGCTATGCTGGCAAGCTATCCCTTGCAGTGA 1052
||||||| |||||||||||||||||||||||
Sbjct 1021 TGCTATGATGGCAAGCTATCCCTTGCAGTGA 1051
> AT1G06265.1 | Symbols: | other RNA | chr1:1914943-1917661 REVERSE
LENGTH=2210
Length=2210
Score = 736 bits (398), Expect = 0.0
Identities = 414/422 (98%), Gaps = 0/422 (0%)
Strand=Plus/Minus
Query 45 AACCTGACCCTTGTCGTTTTGATATGCTTTGTCTTGATAGCTTCAAAGCTATGTTCCGTC 104
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1023 AACCTGACCCTTGCCGTTTTGATTTGCTTTGTCTTGATAGCTTCAAAGCTATGTTCCGTC 964
Query 105 AATTCCTCTGTGTATGACCCACACAAAACCCTGAAGCAGCGGTTCGAGAAGTGGCTTAAA 164
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GATTCCTCTGTGTATGACCCACACAAAACCCTGAAGCAGCGGTTCGAGAAGTGGCTTAAA 904
Query 165 ACCCACAGCAAACTATATGGAGGAAGGGATGAGTGGATGCTACGGTTTGGGATATACCAG 224
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 903 ACCCACAGCAAATTATATGGAGGAAGGGATGAGTGGATGCTACGGTTTGGGATATATCAG 844
Query 225 TCTAACGTCCAATTGATTGACTACATCAACTCCCTCCACTTGCCCTTTAAGCTAACGGAT 284
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TCTAACGTCCAGTTGATTGACTACATCAACTCCCTCCACTTGCCCTTTAAGCTAACGGAT 784
Query 285 AACAGATTTGCAGACATGACCAATTCTGAGTTTAAGGCCCATTTTCTCGGGTTGAACACG 344
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 AATAGATTTGCAGATATGACCAATTCTGAGTTTAAGGCCCATTTTCTCGGGTTGAACACG 724
Query 345 TCTTCCTTGAGGTTACACAAGAAGCAGAGACCAGTTTGTGACCCAGCAGGCAATGTCCCG 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 TCTTCCTTGAGGTTACACAAGAAGCAGAGACCAGTTTGTGACCCAGCAGGCAATGTCCCG 664
Query 405 GACGCTGTGGACTGGAGGACTCAAGGTGCTGTGACTCCTATCAGAAATCAAGGAAAATGC 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GACGCTGTGGACTGGAGGACTCAAGGTGCTGTGACTCCTATCAGAAATCAAGGAAAATGC 604
Query 465 GG 466
||
Sbjct 603 GG 602
Score = 529 bits (286), Expect = 2e-149
Identities = 300/307 (98%), Gaps = 0/307 (0%)
Strand=Plus/Minus
Query 766 TACAAATCGCTGCAGCTCAACAGCCAGTATCAGTTGGAATCGATGCTGGTGGGTTTATCT 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TACAAATCGCTGCAGCTCAACAGCCAGTATCAGTTGGAATCGATGCTGGTGGGTTTATCT 304
Query 826 TTCAGCTCTACTCTTCTGGTGTTTTCACAAGTTACTGTGGAACAAATCTCAACCATGGAG 885
||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 303 TTCAGCTCTACTCCTCCGGTGTTTTCACAAATTACTGTGGAACAAATCTCAACCATGGAG 244
Query 886 TGACTGTTGTTGGATATGGAGTAGAAGGCGATCAAAAGTACTGGATCGTAAAGAATTCAT 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TGACTGTTGTTGGATATGGAGTAGAAGGCGATCAAAAGTACTGGATCGTAAAGAATTCAT 184
Query 946 GGGGAACTGGCTGGGGTGAAGAAGGCTACATACGGATGGAGCGTGGTATAAGCGAAGACA 1005
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 183 GGGGAACTGGCTGGGGTGAAGAAGGCTACATACGGATGGAGCGTGGTGTAAGTGAAGACA 124
Query 1006 CGGGTAAATGTGGTATTGCTATGCTGGCAAGCTATCCCTTGCAGTGAGTCCATGAATCTC 1065
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 123 CGGGTAAATGTGGTATTGCTATGATGGCAAGCTATCCCTTGCAGTGAGTCCATGAATCTC 64
Query 1066 CACAAGC 1072
|| ||||
Sbjct 63 CATAAGC 57
Score = 176 bits (95), Expect = 4e-43
Identities = 103/107 (96%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 582 AACAAAGGCTGTAGTGGCGGATTAATGGAAACAGCCTTTGAATTCATCAAAAGCAATGGT 641
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 467 AACAAAGGCTGTAGTGGCGGATTAATGGAAACAGCATTTGAATTCATCAAAACCAATGGT 408
Query 642 GGACTCACCACCGAGACCGACTACCCATACACAGGCATAGAGGGTAC 688
|||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 407 GGACTCGCCACGGAGACCGACTACCCATACACAGGCATAGAGGGTAC 361
Score = 58.4 bits (31), Expect = 1e-07
Identities = 34/35 (97%), Gaps = 1/35 (3%)
Strand=Plus/Minus
Query 462 TGC-GGAGGTTGCTGGGCATTCTCTGCAGTAGCAG 495
||| |||||||||||||||||||||||||||||||
Sbjct 502 TGCAGGAGGTTGCTGGGCATTCTCTGCAGTAGCAG 468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52559970615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5