BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919342
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06270.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1749 0.0
> AT1G06270.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:1918088-1919760 REVERSE LENGTH=1520
Length=1520
Score = 1749 bits (947), Expect = 0.0
Identities = 1032/1074 (96%), Gaps = 2/1074 (0%)
Strand=Plus/Plus
Query 1 TCAGGTCTCGGAGAATAGGAAATGGCATTTCGCTTGACAAATCTGCGAAAACCTCTTGCT 60
||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 314 TCAGGTCTCTGAGAATAGGAAATGGCAATTCGCTTGACGCATCTGCGAAAACCTCTTGCT 373
Query 61 TATGCTCGGTCCTTCAATGCCTGCTTTCCGTTTTTTCGGTCAATCTCTTCCTTTGAAGCG 120
||| |||||||||| ||| |||| |||||||||| ||||||||||| ||||||||||||
Sbjct 374 TATTCTCGGTCCTTTGATGTCTGCATTCCGTTTTTCCGGTCAATCTCGTCCTTTGAAGCG 433
Query 121 GTTGAAAAGGCGATAAAATGTGCTGTTGAGACAAAGGAGTATCTTAGAATCCCTGAACTT 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 434 GTTGAAAAGGCGATAAAATGTGCTGTTGAAACAAAGGAGTATCTTAGAATCCCCGAACTT 493
Query 181 GTTGTTTCACTCAAAGAGCCTTACCAAAACTCAATGTTATTCTCTTTTCTCTCTGCTTTC 240
|||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||
Sbjct 494 GTTGTTTCACTCAAAGAGCCTTACCAAAACTCAACGTTGTTTTCTTTTCTCTCTGCTTTC 553
Query 241 CAACATCATCATAGAATCCGAGTCATTGACGAAATCCTCCAAAGTTTTGTTCCTGTGAGG 300
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 554 CAACGTCATCATAGAATCAGAGTCATTGACGAAATCCTCCAAAGTTTTGTTCCTGTGAGA 613
Query 301 CCTCGTTCTCTGCCCAAGATTGTCTACTCCAGTCTTCTTACTTACTGCCTTCAGAGTTCC 360
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 614 CCTCGTTCACTGCCCAAGATTGTCTACTCCAGTCTTCTTACTTATTGCCTTCAGAGTTCC 673
Query 361 GATCCTCTTCCTTTGTCTTTCGCAATCCTCCAACGCACTCTTCGTTCTGGCTGTCTTCCT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 674 GATCCTCTTCCTTTGTCTTTCGCAATCCTCCAACGCACTCTTCGTTCTGGCTGTCTACCT 733
Query 421 AACCCTCAGACTCAACTCCTTCTGTCTGATGCTTGGCTTGAACGGCGACGAGGATCCCAG 480
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 734 AACCCTCAGACTCATCTCCTTCTCTCTGATGCTTGGCTTGAACGGCGACGAGGATCCCAG 793
Query 481 TCTGTTGCTGATATTATTAATGAGATGAAATTGATTGGATACAGTCCTGATACTGGAACC 540
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TCTGTTGCAGATATTATTAATGAGATGAAATTGATTGGATACAGTCCTGATACTGGAACC 853
Query 541 TGCAATTATTTAGTGTCCTCTCTGTGTGCTGTTGATAAGTTGGATGAGGCCATTAAAGTA 600
|||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 854 TGCAATTACTTAGTGTCCTCTCTCTGTGCTGTTGATAAGTTGGATGAGGCGATTAAAGTT 913
Query 601 GTTGAGGAAATGAGTGCAGCTGGCTGTATTCCTGATGTGGAAAGTTATGGGGCGGTGATT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 GTTGAGGAAATGAGTGCAGCTGGCTGTATTCCTGATGTGGAAAGTTATGGGGCGGTGATT 973
Query 661 AACTCATTGTGTTTGGCTAGAAAGACTAAC-GATGTGGTGAAGATTGTCAAAGAGATGGT 719
|| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 974 AATTCATTGTGTTTGGCTAGAAAGACT-ACTGATGTGGTGAAGATTGTCAAAGAGATGGT 1032
Query 720 GAGCAAAGCTGGAATTTCTCCACGGAAAGGGATGCTGACAAAAGTAGCAGCAGCTCTGAG 779
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1033 GAGCAAAGCTGGGATCTCTCCACGGAAAGGGATGCTGACAAAAGTAGCAGCAGCTCTCAG 1092
Query 780 AGCCAACAGGGAAATTTGGAAAGCCATTGAGATGATGGAGTTTGTAGAAAGTCGGGATTA 839
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1093 AGCCAACAGGGAAATTTGGAAAGCCATTGAGATGATCGAGTTTGTAGAAAGTCGGGATTA 1152
Query 840 CCCTGTGGAGTTTGAGAGTTATGAGGTAGTAGTCGAGGGTTGCCTGGAGGTTAGGGAATA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 CCCTGTGGAGTTTGAGAGTTATGAGGTAGTAGTCGAGGGTTGCCTGGAGGTTAGGGAATA 1212
Query 900 CATTTTGGCAGGGAAGATGGTGATGAGAATGACTGATAGAGGGTTCATACCATATATCAA 959
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1213 CATTTTGGCAGGGAAGGTGGTGATGAGAATGACTGATAGAGGGTTCATACCGTATATCAA 1272
Query 960 GGTTAGGCAAAAAGTGGTGGAGCGTCTGATTAGCATCGGTGAATGGAAGCTTGCTTGTAC 1019
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1273 GGTTAGGCAAAAAGTGGTTGAGCGTCTGATTAACATCGGTGAATGGAAGCTTGCTTGTAC 1332
Query 1020 TGTTAGACAAAGGCTTTCGGAACTGAGGTCTTAGGTATTTCTCAGATAAGTGTT 1073
||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1333 TGTTAGACAAAGGGTTTCTGAACTGAGGTCTTAGGTATTTCTCAGATAAGTGTT 1386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52559970615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5